version 1.3.0

• Now GFF3toolkit published on PyPI as gff3tool

version 1.4.0

Please use v1.4.1 release

version 1.2.0

This release contains the following changes:

• added a new program, gff3_fix.py, which can automatically fix 30 error types detected by gff3_QC.py
• gff3_QC.py: added a new argument, noncanonical_gene, to accommodate non-canonical gene models in the GFF3toolkit workflow
• gff3_merge.py:
  • modified to accommodate non-canonical gene models in the GFF3toolkit workflow. Includes new arguments user_defined_file1 and user_defined file2
• several other fixes

version 1.1.0

This version contains:

• Updated program names
• Updated arguments to individual programs
  • gff3_QC.py - new argument -i allows you to specify whether the initial CDS phase should be checked
  • gff3_to_fasta.py - new option that allows advanced users to specify their own sequence type via parent and child features
• multiple bug fixes

GFF3toolkit version 1.0

This is the initial release of the GFF3toolkit.