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Software requirements #41

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tavareshugo opened this issue Mar 11, 2024 · 0 comments
Open

Software requirements #41

tavareshugo opened this issue Mar 11, 2024 · 0 comments

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@tavareshugo
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tavareshugo commented Mar 11, 2024 •
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Keeping this issue as a way to track the setup needed on our virtual (AWS) HPC.

System installation:

  • singularity -> need to configure it so it sees the entire filesystem by default (need to add binds to /etc/singularity/singularity.conf)
  • eog (image viewer)
  • R (latest version is fine) and install.packages('argparse')
  • Python (latest version is fine)

Install as modules:

  • bowtie 1.3.1
  • bowtie2 2.4.0 and 2.5.3 --> so when we do module avail we see both versions.
  • numpy 1.26.4
  • matplotlib 3.8.3

Install as mamba environments:

  • mamba create -n scipy scipy==1.12.0 numpy==1.26.4 matplotlib==3.8.3
  • mamba create -n mapping bowtie2==2.5.3

This should cache these packages, which are then installed during the course demonstration.
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