diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index d2fc1d0ab8..5d34f39752 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -29,7 +29,7 @@ repos:
         exclude: ^source/3rdparty
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.6.5
+    rev: v0.6.7
     hooks:
       - id: ruff
         args: ["--fix"]
@@ -146,7 +146,7 @@ repos:
         exclude: .pre-commit-config.yaml|source/lmp
   # customized pylint rules
   - repo: https://github.com/pylint-dev/pylint/
-    rev: v3.2.7
+    rev: v3.3.0
     hooks:
       - id: pylint
         entry: env PYTHONPATH=source/checker pylint
diff --git a/pyproject.toml b/pyproject.toml
index 28fe114e01..a1829016cb 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -414,4 +414,4 @@ plugins = ["source.3rdparty.coverage_plugins.jit_plugin"]
 [tool.pylint.'MESSAGES CONTROL']
 load-plugins = "deepmd_checker"
 disable = "all"
-enable = "EDP01,EDP02"
+enable = "E8001,E8002"
diff --git a/source/checker/README.md b/source/checker/README.md
index 2a905f93a5..368852034c 100644
--- a/source/checker/README.md
+++ b/source/checker/README.md
@@ -1,4 +1,4 @@
 # DeePMD-kit customized Pylint plugin
 
-- EDP01: Require explicit device when initializing a PyTorch tensor.
-- EDP02: Require explicit dtype when initializing a NumPy array, a TensorFlow tensor, or a PyTorch tensor.
+- E8001: Require explicit device when initializing a PyTorch tensor.
+- E8002: Require explicit dtype when initializing a NumPy array, a TensorFlow tensor, or a PyTorch tensor.
diff --git a/source/checker/deepmd_checker.py b/source/checker/deepmd_checker.py
index 052d011c47..d763835fdc 100644
--- a/source/checker/deepmd_checker.py
+++ b/source/checker/deepmd_checker.py
@@ -21,12 +21,12 @@
 class DPChecker(BaseChecker):
     name = "deepmd-checker"
     msgs: ClassVar[dict] = {
-        "EDP01": (
+        "E8001": (
             "No explicit device.",
             "no-explicit-device",
             "Require explicit device when initializing a PyTorch tensor.",
         ),
-        "EDP02": (
+        "E8002": (
             "No explicit dtype.",
             "no-explicit-dtype",
             "Require explicit dtype when initializing a NumPy array, a TensorFlow tensor, or a PyTorch tensor.",