diff --git a/R/utils.R b/R/utils.R index 60b681b..ee2a33d 100644 --- a/R/utils.R +++ b/R/utils.R @@ -423,15 +423,15 @@ return_dependencies <- function(){ "RColorBrewer", "labeling", "withr"), - "do_AffinityAnalysisPlot" = c("decoupleR"), - "do_AlluvialPlot" = c("ggalluvial"), + "do_AffinityAnalysisPlot" = "decoupleR", + "do_AlluvialPlot" = "ggalluvial", "do_BarPlot" = c("colorspace", "ggrepel"), "do_BeeSwarmPlot" = c("colorspace", "ggbeeswarm", "ggrastr"), "do_BoxPlot" = "ggsignif", "do_CellularStatesPlot" = c("pbapply", "ggExtra", "ggplotify", "scattermore"), - "do_ChordDiagramPlot" = c("circlize"), + "do_ChordDiagramPlot" = "circlize", "do_ColorPalette" = NULL, - "do_CopyNumberVariantPlot" = c("ggdist"), + "do_CopyNumberVariantPlot" = "ggdist", "do_CorrelationPlot" = NULL, "do_DimPlot" = c("colorspace", "ggplotify", "scattermore"), "do_DotPlot" = NULL, @@ -439,23 +439,23 @@ return_dependencies <- function(){ "do_ExpressionHeatmap" = NULL, "do_FeaturePlot" = c("scattermore", "MASS"), "do_FunctionalAnnotationPlot" = c("clusterProfiler", "enrichplot", "ggnewscale", "AnnotationDbi"), - "do_GeyserPlot" = c("ggdist"), + "do_GeyserPlot" = "ggdist", "do_GroupedGOTermPlot" = c("clusterProfiler", "AnnotationDbi"), "do_GroupwiseDEPlot" = NULL, "do_MetadataPlot" = "cluster", - "do_LigandReceptorPlot" = c("liana"), + "do_LigandReceptorPlot" = "liana", "do_LoadingsPlot" = NULL, - "do_DiffusionMapPlot" = c("Matrix"), - "do_NebulosaPlot" = c("Nebulosa"), + "do_DiffusionMapPlot" = "Matrix", + "do_NebulosaPlot" = "Nebulosa", "do_PathwayActivityPlot" = NULL, - "do_RidgePlot" = c("ggridges"), + "do_RidgePlot" = "ggridges", "do_SCExpressionHeatmap" = NULL, "do_SCEnrichmentHeatmap" = c("UCell", "AUCell"), "do_TermEnrichmentPlot" = NULL, "do_TFActivityPlot" = NULL, "do_ViolinPlot" = NULL, - "do_VolcanoPlot" = c("ggrepel"), - "save_Plot" = c("svglite")) + "do_VolcanoPlot" = "ggrepel", + "save_Plot" = "svglite") return(pkg_list) }