Failed to generate the output for 07 test-data

[mthang]

All the test-data works except the 07 test-data. The maxquant wrapper failed at 07 test-data while testing using planemo. Any idea?

tools-galaxyp/tools/maxquant/maxquant.xml

Line 939 in f1e1cd2

<output name="ptxqc_report" file="07/combined/txt/report_v1.0.10_combined.pdf" compare="sim_size" />

Best

[bernt-matthias]

What is the failure? Do you test with --biocontainers?

[mthang]

@bernt-matthias I can share the tool_test_output.html with you if you want. I have tested the maxquant.xml wrapper with planemo test --biocontainers and all tests failed. I cloned the latest tools-galaxyp repo and replaced the maxquant.xml and the macros.xml with my maxquant.xml and macros.xml. One of the issues that I can think of is the maxquant version ( old - 1.6.17 and my version is 2.0.3). In the macros.xml, I also included the dotnet package, but that's not in the original maxquant.xml . Therefore, I tested the maxquant.xml using planemot test --update_test_data --galaxy_root=/path/to/local/galaxy maxquant.xml , and it passed all the tests.