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pom.xml
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pom.xml
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<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<artifactId>BigStitcher-Spark</artifactId>
<version>0.0.2-SNAPSHOT</version>
<parent>
<groupId>org.scijava</groupId>
<artifactId>pom-scijava</artifactId>
<version>31.1.0</version>
<relativePath/>
</parent>
<name>BigStitcher Spark</name>
<description>Spark-based parallel BigStitcher project.</description>
<url>https://</url>
<inceptionYear>2021</inceptionYear>
<organization>
<name>Fiji</name>
<url>http://fiji.sc/</url>
</organization>
<licenses>
<license>
<name>GNU General Public License v2+</name>
<url>http://www.gnu.org/licenses/gpl.html</url>
<distribution>repo</distribution>
</license>
</licenses>
<developers>
<developer>
<id>StephanPreibisch</id>
<name>Stephan Preibisch</name>
<url>http://imagej.net/User:StephanP</url>
<roles>
<role>founder</role>
<role>lead</role>
<role>developer</role>
<role>debugger</role>
<role>reviewer</role>
<role>support</role>
<role>maintainer</role>
</roles>
</developer>
</developers>
<contributors>
<contributor>
<name>Marwan Zouinkhi</name>
<url>https://</url>
</contributor>
</contributors>
<mailingLists>
<mailingList>
<name>ImageJ Forum</name>
<archive>http://forum.imagej.net/</archive>
</mailingList>
</mailingLists>
<scm>
<connection>scm:git:https://github.com/PreibischLab/BigStitcher-Spark</connection>
<developerConnection>scm:git:[email protected]:PreibischLab/BigStitcher-Spark</developerConnection>
<tag>HEAD</tag>
<url>https://github.com/PreibischLab/BigStitcher-Spark</url>
</scm>
<issueManagement>
<system>GitHub Issues</system>
<url>https://github.com/PreibischLab/BigStitcher-Spark/issues</url>
</issueManagement>
<ciManagement>
<system>GitHub Actions</system>
<url>https://github.com/PreibischLab/BigStitcher-Spark/actions</url>
</ciManagement>
<properties>
<scijava.jvm.version>1.8</scijava.jvm.version>
<bigdataviewer-core.version>10.3.0</bigdataviewer-core.version>
<spim_data.version>2.2.7</spim_data.version>
<license.licenseName>gpl_v2</license.licenseName>
<license.copyrightOwners>Developers.</license.copyrightOwners>
</properties>
<repositories>
<!-- NB: for project parent -->
<repository>
<id>imagej.public</id>
<url>https://maven.imagej.net/content/groups/public</url>
</repository>
<repository>
<id>jitpack.io</id>
<url>https://jitpack.io</url>
</repository>
</repositories>
<dependencies>
<dependency>
<groupId>sc.fiji</groupId>
<artifactId>bigdataviewer-core</artifactId>
</dependency>
<dependency>
<groupId>sc.fiji</groupId>
<artifactId>spim_data</artifactId>
</dependency>
<dependency>
<groupId>com.amazonaws</groupId>
<artifactId>aws-java-sdk-s3</artifactId>
<version>${aws-java-sdk-s3.version}</version>
</dependency>
<dependency>
<groupId>org.janelia.saalfeldlab</groupId>
<artifactId>n5</artifactId>
<version>2.2.1</version>
</dependency>
<dependency>
<groupId>org.janelia.saalfeldlab</groupId>
<artifactId>n5-aws-s3</artifactId>
<version>3.2.0</version>
<exclusions>
<exclusion>
<groupId>org.janelia.saalfeldlab</groupId>
<artifactId>n5</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>2.6.5</version>
</dependency>
<dependency>
<groupId>org.apache.spark</groupId>
<artifactId>spark-core_2.11</artifactId>
<version>2.4.7</version>
<exclusions>
<exclusion>
<artifactId>netty-all</artifactId>
<groupId>io.netty</groupId>
</exclusion>
<exclusion>
<artifactId>jcl-over-slf4j</artifactId>
<groupId>org.slf4j</groupId>
</exclusion>
<exclusion>
<artifactId>jul-to-slf4j</artifactId>
<groupId>org.slf4j</groupId>
</exclusion>
<exclusion>
<artifactId>slf4j-log4j12</artifactId>
<groupId>org.slf4j</groupId>
</exclusion>
<exclusion>
<artifactId>aopalliance-repackaged</artifactId>
<groupId>org.glassfish.hk2.external</groupId>
</exclusion>
<exclusion>
<artifactId>javax.inject</artifactId>
<groupId>org.glassfish.hk2.external</groupId>
</exclusion>
<exclusion>
<artifactId>jersey-client</artifactId>
<groupId>org.glassfish.jersey.core</groupId>
</exclusion>
<exclusion>
<artifactId>lz4</artifactId>
<groupId>net.jpountz.lz4</groupId>
</exclusion>
<exclusion>
<artifactId>jets3t</artifactId>
<groupId>net.java.dev.jets3t</groupId>
</exclusion>
</exclusions>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</dependency>
<dependency>
<groupId>io.netty</groupId>
<artifactId>netty-all</artifactId>
<version>4.1.17.Final</version>
</dependency>
<dependency>
<groupId>io.netty</groupId>
<artifactId>netty</artifactId>
<version>3.9.9.Final</version>
</dependency>
<dependency>
<groupId>net.preibisch</groupId>
<artifactId>BigStitcher</artifactId>
<version>0.8.3</version>
</dependency>
<dependency>
<groupId>info.picocli</groupId>
<artifactId>picocli</artifactId>
</dependency>
</dependencies>
<groupId>net.preibisch</groupId>
<profiles>
<profile>
<id>fatjar</id>
<build>
<plugins>
<!-- Maven shade for Uber Jar -->
<!-- https://maven.apache.org/plugins/maven-shade-plugin/shade-mojo.html -->
<!-- https://databricks.gitbooks.io/databricks-spark-knowledge-base/content/troubleshooting/missing_dependencies_in_jar_files.html -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<configuration>
<!-- Do not minimize for now to speed up packaging. -->
<transformers combine.children="append">
<transformer implementation="org.apache.maven.plugins.shade.resource.AppendingTransformer">
<resource>META-INF/json/mpicbg.spim.data.generic.sequence.ImgLoaderIo</resource>
</transformer>
</transformers>
<!--<minimizeJar>true</minimizeJar> -->
<filters>
<filter>
<artifact>*:*</artifact>
<excludes>
<exclude>Angle0.tif</exclude>
<exclude>LICENSE</exclude>
<exclude>META-INF/DEPENDENCIES</exclude>
<exclude>META-INF/LICENSE</exclude>
<exclude>META-INF/NOTICE</exclude>
<exclude>META-INF/json/org.scijava.plugin.Plugin</exclude>
<exclude>META-INF/*.MF</exclude>
<exclude>META-INF/*.SF</exclude>
<exclude>META-INF/*.DSA</exclude>
<exclude>META-INF/*.RSA</exclude>
<exclude>META-INF/*.txt</exclude>
<exclude>module-info.class</exclude>
<exclude>plugins.config</exclude>
</excludes>
</filter>
</filters>
<!-- Additional configuration. -->
<artifactSet>
<excludes>
<exclude>*jackson*</exclude>
</excludes>
</artifactSet>
<relocations>
<relocation>
<pattern>org.apache.commons.compress</pattern>
<shadedPattern>org.janelia.saalfeldlab.org.apache.commons.compress</shadedPattern>
</relocation>
</relocations>
</configuration>
<!-- binds by default to package phase -->
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
</execution>
</executions>
</plugin>
<!-- Maven shade end -->
</plugins>
</build>
</profile>
</profiles>
</project>