diff --git a/docs/mcmicro_02.ipynb b/docs/mcmicro_02.ipynb index a68be40..93c26e3 100644 --- a/docs/mcmicro_02.ipynb +++ b/docs/mcmicro_02.ipynb @@ -25,19 +25,11 @@ "source": [ "```{note}\n", "\n", - "This notebook serves as a demo for how to integrate lamindb with Nextflow runs.\n", - "Typically, you run the Nextflow workflow from the command line or Nextflow tower and then register input and output data with a script.\n", + "Typically, you run the Nextflow workflow from the command line or Seqera Platform and then register input and output data with a script.\n", + "The Seqera Platform allows for [post-run scripts](https://docs.seqera.io/platform/23.4.0/launch/advanced#pre-and-post-run-scripts) that can automate this process.\n", "```" ] }, - { - "cell_type": "markdown", - "id": "fe9ab200", - "metadata": {}, - "source": [ - "## Setup" - ] - }, { "cell_type": "markdown", "id": "b7c8e52d", @@ -104,7 +96,11 @@ "cell_type": "code", "execution_count": null, "id": "38e83af2", - "metadata": {}, + "metadata": { + "tags": [ + "hide-output" + ] + }, "outputs": [], "source": [ "!python register_mcmicro_run.py" @@ -185,14 +181,6 @@ "source": [ "!lamin delete --force nextflow-mcmicro" ] - }, - { - "cell_type": "markdown", - "id": "ce3e6e84", - "metadata": {}, - "source": [ - "If you are interested in registering bulk RNA-seq data with Lamin, you can have a look at our [nf-core/rnaseq example](https://github.com/laminlabs/nextflow-lamin-usecases/blob/main/nextflow_bulk_rna.ipynb)." - ] } ], "metadata": {