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DrugBank Sample Code

This repo contains sample code to help you get started with the DrugBank API or your DrugBank portal downloads!

Be sure to check out the documentation:

Environment Variables

The sample code uses the following environment variables:

  • DB_API_KEY : the API key you use to make API calls, as seen at dev.drugbank.com
  • DB_USER : the username you use to sign in at portal.drugbank.com
  • DB_PASS : the password you use to sign in at portal.drugbank.com

Scripts

NodeJS

NodeJS examples can be found in the nodejs/ folder. These examples do have some external dependencies, which are declared in the package.json file.

One way to experiment with the provided files is to write a script which imports and uses them. All files export their functions and classes for import.

The following example scripts are provided:

  • api.js This script contains sample code for making requests to the API, in nodejs.
  • portal.js This script contains sample code for downloading archives from your portal, and reading drug JSON files in a zip archive.

Python(3)

Python examples can be found in the python/ folder. These examples have been written and tested against python3.

These examples do have some external dependencies, which are declared in the requirements.txt file. To make a virtual environment and install the dependencies, you could run:

python3 -m venv env/
source env/bin/activate
pip install wheel pip # make sure pip is up to date
pip install -r requirements.txt

The following example scripts are provided:

  • portal.py This script contains sample code for downloading archives from your portal.