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[FEA] Enable NN Descent for larger data dimensions #290

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jinsolp opened this issue Aug 14, 2024 · 0 comments
Open

[FEA] Enable NN Descent for larger data dimensions #290

jinsolp opened this issue Aug 14, 2024 · 0 comments
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feature request New feature or request

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@jinsolp
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jinsolp commented Aug 14, 2024

Description

Currently, GNND::build() has a preprocess_data_kernel, which requires shared memory size of;

sizeof(Data_t) * ceildiv(build_config_.dataset_dim, static_cast<size_t>(raft::warp_size())) * raft::warp_size()

Considering sizeof(Data_t) = 4 for standard cases such as fp32, and considering a shared memory size of 48KB, this restricts the dataset dimension to be smaller than 12000.

It would be nice to have such features for datasets with large dimensions (> 20000), which is the case for single cell RNA datasets (e.g. datasets here).

@jinsolp jinsolp added the feature request New feature or request label Aug 14, 2024
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