Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Unable to upload 62mb file to figshare #100

Open
joelnitta opened this issue Dec 26, 2023 · 0 comments
Open

Unable to upload 62mb file to figshare #100

joelnitta opened this issue Dec 26, 2023 · 0 comments

Comments

@joelnitta
Copy link

Is there a limit on the size of files that can be uploaded to figshare?

I consistently get a "Broken pipe" error when trying to upload this ca. 62 mb file: https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdmp.zip

temp_file <- tempfile()
download.file("https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdmp.zip", temp_file)

cli <- deposits::depositsClient$new(service = "figshare")

cli$deposit_retrieve(19474316)

cli$deposit_upload_file(
  path = temp_file,
  deposit_id = 19474316,
  overwrite = TRUE,
  compress = "no"
)
#> Error:
#> ! OpenSSL SSL_write: Broken pipe, errno 32
#> Backtrace:
#>     ▆
#>  1. └─cli$deposit_upload_file(...)
#>  2.   └─private$upload_local_file(path, overwrite, compress) at ropenscilabs-deposits-bc3ca40/R/client-main.R:1095:20
#>  3.     └─deposits:::upload_figshare_file(self$id, url, self$headers, path) at ropenscilabs-deposits-bc3ca40/R/client-private-methods.R:112:12
#>  4.       └─httr2::req_perform(req) at ropenscilabs-deposits-bc3ca40/R/upload-figshare.R:35:8
#>  5.         └─base::tryCatch(...)
#>  6.           └─base (local) tryCatchList(expr, classes, parentenv, handlers)
#>  7.             └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
#>  8.               └─value[[3L]](cond)

Created on 2023-12-26 with reprex v2.0.2

Session info
sessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#>  setting  value
#>  version  R version 4.3.1 (2023-06-16)
#>  os       Ubuntu 22.04.3 LTS
#>  system   x86_64, linux-gnu
#>  ui       X11
#>  language (EN)
#>  collate  en_US.UTF-8
#>  ctype    en_US.UTF-8
#>  tz       Etc/UTC
#>  date     2023-12-26
#>  pandoc   3.1.6.1 @ /usr/bin/ (via rmarkdown)
#> 
#> ─ Packages ───────────────────────────────────────────────────────────────────
#>  package     * version   date (UTC) lib source
#>  backports     1.4.1     2021-12-13 [1] RSPM (R 4.3.0)
#>  checkmate     2.2.0     2023-04-27 [1] RSPM (R 4.3.0)
#>  cli           3.6.1     2023-03-23 [1] RSPM (R 4.3.0)
#>  curl          5.0.1     2023-06-07 [1] RSPM (R 4.3.0)
#>  deposits      0.2.1.052 2023-12-26 [1] Github (ropenscilabs/deposits@bc3ca40)
#>  digest        0.6.33    2023-07-07 [1] RSPM (R 4.3.0)
#>  evaluate      0.21      2023-05-05 [1] RSPM (R 4.3.0)
#>  fansi         1.0.4     2023-01-22 [1] RSPM (R 4.3.0)
#>  fastmap       1.1.1     2023-02-24 [1] RSPM (R 4.3.0)
#>  fs            1.6.3     2023-07-20 [1] RSPM (R 4.3.0)
#>  glue          1.6.2     2022-02-24 [1] RSPM (R 4.3.0)
#>  here          1.0.1     2020-12-13 [1] RSPM (R 4.3.0)
#>  htmltools     0.5.5     2023-03-23 [1] RSPM (R 4.3.0)
#>  httr2         0.2.3     2023-05-08 [1] RSPM (R 4.3.0)
#>  jsonlite      1.8.7     2023-06-29 [1] RSPM (R 4.3.0)
#>  knitr         1.43      2023-05-25 [1] RSPM (R 4.3.0)
#>  lifecycle     1.0.3     2022-10-07 [1] RSPM (R 4.3.0)
#>  magrittr      2.0.3     2022-03-30 [1] RSPM (R 4.3.0)
#>  pillar        1.9.0     2023-03-22 [1] RSPM (R 4.3.0)
#>  pkgconfig     2.0.3     2019-09-22 [1] RSPM (R 4.3.0)
#>  purrr         1.0.1     2023-01-10 [1] RSPM (R 4.3.0)
#>  R.cache       0.16.0    2022-07-21 [1] RSPM (R 4.3.0)
#>  R.methodsS3   1.8.2     2022-06-13 [1] RSPM (R 4.3.0)
#>  R.oo          1.25.0    2022-06-12 [1] RSPM (R 4.3.0)
#>  R.utils       2.12.2    2022-11-11 [1] RSPM (R 4.3.0)
#>  R6            2.5.1     2021-08-19 [1] RSPM (R 4.3.0)
#>  rappdirs      0.3.3     2021-01-31 [1] RSPM (R 4.3.0)
#>  reprex        2.0.2     2022-08-17 [1] RSPM (R 4.3.0)
#>  rlang         1.1.1     2023-04-28 [1] RSPM (R 4.3.0)
#>  rmarkdown     2.23      2023-07-01 [1] RSPM (R 4.3.0)
#>  rprojroot     2.0.3     2022-04-02 [1] RSPM (R 4.3.0)
#>  sessioninfo   1.2.2     2021-12-06 [1] RSPM (R 4.3.0)
#>  styler        1.10.1    2023-06-05 [1] RSPM (R 4.3.0)
#>  tibble        3.2.1     2023-03-20 [1] RSPM (R 4.3.0)
#>  utf8          1.2.3     2023-01-31 [1] RSPM (R 4.3.0)
#>  vctrs         0.6.3     2023-06-14 [1] RSPM (R 4.3.0)
#>  withr         2.5.0     2022-03-03 [1] RSPM (R 4.3.0)
#>  xfun          0.39      2023-04-20 [1] RSPM (R 4.3.0)
#>  yaml          2.3.7     2023-01-23 [1] RSPM (R 4.3.0)
#> 
#>  [1] /renv/R-4.3/x86_64-pc-linux-gnu
#>  [2] /root/.cache/R/renv/sandbox/R-4.3/x86_64-pc-linux-gnu/25ebdc09
#>  [3] /usr/local/lib/R/library
#> 
#> ──────────────────────────────────────────────────────────────────────────────
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant