From dfc6ef3fbf6ab4d1e46d8b172f79ba3e3fcf614e Mon Sep 17 00:00:00 2001
From: samuel-marsh <samuel.marsh@childrens.harvard.edu>
Date: Thu, 26 Sep 2024 10:26:59 -0400
Subject: [PATCH] Update docs

---
 man/Plot_Pie_Proportions.Rd | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/man/Plot_Pie_Proportions.Rd b/man/Plot_Pie_Proportions.Rd
index 567081e95..f1e63a373 100644
--- a/man/Plot_Pie_Proportions.Rd
+++ b/man/Plot_Pie_Proportions.Rd
@@ -6,7 +6,9 @@
 \usage{
 Plot_Pie_Proportions(
   seurat_object,
-  group_by_var = "Total",
+  group_by_var = "ident",
+  split.by = NULL,
+  num_columns = NULL,
   colors_use = NULL,
   ggplot_default_colors = FALSE,
   color_seed = 123
@@ -15,7 +17,11 @@ Plot_Pie_Proportions(
 \arguments{
 \item{seurat_object}{Seurat object name.}
 
-\item{group_by_var}{meta data column to classify samples (default = "Total"; totals across all samples).}
+\item{group_by_var}{meta data column to classify samples (default = "ident" and will use \code{active.ident}.}
+
+\item{split.by}{meta data variable to use to split plots.  Default is NULL which will plot across entire object.}
+
+\item{num_columns}{number of columns in plot.  Only valid if \code{split.by} is not NULL.}
 
 \item{colors_use}{color palette to use for plotting.}