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@@ -348,7 +348,7 @@
toc()
## 0.688 sec elapsed
+## 0.641 sec elapsed
Marsh S (2024). scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing. -R package version 2.1.0, https://samuel-marsh.github.io/scCustomize/, https://doi.org/10.5281/zenodo.5706431, https://github.com/samuel-marsh/scCustomize. +R package version 2.1.1, https://samuel-marsh.github.io/scCustomize/, https://doi.org/10.5281/zenodo.5706431, https://github.com/samuel-marsh/scCustomize.
@Manual{, title = {scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing}, author = {Samuel Marsh}, year = {2024}, - note = {R package version 2.1.0, https://samuel-marsh.github.io/scCustomize/, https://doi.org/10.5281/zenodo.5706431}, + note = {R package version 2.1.1, https://samuel-marsh.github.io/scCustomize/, https://doi.org/10.5281/zenodo.5706431}, url = {https://github.com/samuel-marsh/scCustomize}, }diff --git a/docs/index.html b/docs/index.html index fc2ed838d..8e45161a9 100644 --- a/docs/index.html +++ b/docs/index.html @@ -33,7 +33,7 @@ diff --git a/docs/news/index.html b/docs/news/index.html index 921251a26..8a1ae40d4 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -17,7 +17,7 @@ @@ -111,7 +111,22 @@
title_prefix
parameter to Iterate_DimPlot_bySample
to unify with Meta_Highlight_Plot
.as.anndata()
to support conversion of Seurat and LIGER objects to anndata format.Convert_Assay()
to perform easy conversions of Seurat assays between V3/4 (Assay) and V5 (Assay5) formats.assay_type
to allow manual control of assay type when creating Seurat object from LIGER using Liger_to_Seurat
.assay_type
to allow manual control of assay type when creating Seurat object from LIGER using Liger_to_Seurat
. Now as.Seurat
.grid_color
to Clustered_DotPlot
to control the color of grid lines (default is no grid lines).Clustered_DotPlot
by additional variable and maintain expression information.Split_Layers()
function for V5 objects.as.Seurat
.
-DotPlot_scCustom
that didn’t correctly pass group.by
when plotting (#158).Variable in meta data which contains variable to split data by, (default is "orig.ident").
name of meta.data column used to split layers if setting group.by = "layers"
.
Assay containing raw data to use, (default is "RNA").