Comparing two scRNA-seq data sets with each other #4756
beginner984
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If you want some tips for running a comparative analysis across datasets, please see the introductory integration vignette: https://satijalab.org/seurat/articles/integration_introduction.html |
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I have 4 patients who are cancer free for 4 years and I have 4 controls too
I want to compare patients with controls
I used Seurat integration of my 10x PBMC data
from 6051 cells 5816 labled correctly (as per say by Seurat documentation)
Is my approach make any sense?
How I can say if patients are similar or different from the controls? Any thoughts please?
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