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Hi all, I have snRNA seq dataset obtained from 2 experimental conditions (stimulation vs control). For each condition, I have 3 different batches. Is there any way I can use integrate function to correct for batch effect as well as experimental condition at the same time? Seurat tutorial for integrate function just shows correcting for different experimental conditions. Thanks |
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Answered by
timoast
Aug 6, 2021
Replies: 1 comment 5 replies
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You can use the same functionality to integrate across batches, experimental conditions, or both. |
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timoast
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You can use the same functionality to integrate across batches, experimental conditions, or both.