Replies: 1 comment 5 replies
-
I don't think there's one best way to do this, it's sort of data dependent. |
Beta Was this translation helpful? Give feedback.
-
I don't think there's one best way to do this, it's sort of data dependent. |
Beta Was this translation helpful? Give feedback.
-
I have a SCT integrated dataset, and following integration I would like to subset this dataset and perform clustering on the cells from a single cluster.
But I am having trouble finding a clear workflow for subclustering, does it exist?
Should I integrate again?
The reason I integrate the entire dataset in the beginning is that if I pull out the cells of interest beforehand, the objects I integrate are very small and this causes some problems during the integration.
I was thinking to use the following workflow:
Does it makes sense to do the subclustering like this?
Beta Was this translation helpful? Give feedback.
All reactions