Broccoli for Windows

[BertramW]

Hi,

1: In NITRC BROCCOLI is specified as ' Operating System: Windows, POSIX/UNIX-like'.
How I can get it run in Windows?

2: Running RandomiseGroupLevel I got the message 'TFCE is currently disabled'. Will it be enabled again? If so, when?

Best,
Bertram

[wanderine]

For Windows you have to run BROCCOLI through Matlab, as there is no terminal in Windows. Here are some precompiled mex-files https://github.com/wanderine/BROCCOLI/tree/master/compiled/Matlab/Windows Yes TFCE will be enabled again, but I don't know when. The main problem is the low speedup compared to randomise, since many clusterings have to be performed. For low cluster defining thresholds (giving large clusters), the parallel clustering used in BROCCOLI seems to be slower than in randomise. 2017-01-11 15:45 GMT+01:00 BertramW <[email protected]>:

…

Hi, 1: In NITRC BROCCOLI is specified as ' Operating System: Windows, POSIX/UNIX-like'. How I can get it run in Windows? 2: Running RandomiseGroupLevel I got the message 'TFCE is currently disabled'. Will it be enabled again? If so, when? Best, Bertram — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#32>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AEGryOvT4SuFuBZzaji0oTUNxJ3Mjcsoks5rROsNgaJpZM4LgqJQ> .

-- Anders Eklund, PhD

[BertramW]

body { font-family:'Times New Roman'; font-size:16px} Many thanks for answering so quickly.Do the mex-files support GPUs? If so, which Matlab version is needed?Best,BertramOn Fri, 13 Jan 2017 11:46:49 +0100, Anders Eklund <[email protected]> wrote:For Windows you have to run BROCCOLI through Matlab, as there is no terminal in Windows. Here are some precompiled mex-files https://github.com/wanderine/BROCCOLI/tree/master/compiled/Matlab/Windows Yes TFCE will be enabled again, but I don't know when. The main problem is the low speedup compared to randomise, since many clusterings have to be performed. For low cluster defining thresholds (giving large clusters), the parallel clustering used in BROCCOLI seems to be slower than in randomise. 2017-01-11 15:45 GMT+01:00 BertramW <[email protected]>:

…

Hi, 1: In NITRC BROCCOLI is specified as ' Operating System: Windows, POSIX/UNIX-like'. How I can get it run in Windows? 2: Running RandomiseGroupLevel I got the message 'TFCE is currently disabled'. Will it be enabled again? If so, when? Best, Bertram — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#32>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AEGryOvT4SuFuBZzaji0oTUNxJ3Mjcsoks5rROsNgaJpZM4LgqJQ> .

-- Anders Eklund, PhD —You are receiving this because you authored the thread.Reply to this email directly, view it on GitHub, or mute the thread. {"api_version":"1.0","publisher":{"api_key":"05dde50f1d1a384dd78767c55493e4bb","name":"GitHub"},"entity":{"external_key":"github/wanderine/BROCCOLI","title":"wanderine/BROCCOLI","subtitle":"GitHub repository","main_image_url":"https://cloud.githubusercontent.com/assets/143418/17495839/a5054eac-5d88-11e6-95fc-7290892c7bb5.png","avatar_image_url":"https://cloud.githubusercontent.com/assets/143418/15842166/7c72db34-2c0b-11e6-9aed-b52498112777.png","action":{"name":"Open in GitHub","url":"https://github.com/wanderine/BROCCOLI"}},"updates":{"snippets":[{"icon":"PERSON","message":"@wanderine in #32: For Windows you have to run BROCCOLI through Matlab, as there is no\nterminal in Windows. Here are some precompiled mex-files\n\nhttps://github.com/wanderine/BROCCOLI/tree/master/compiled/Matlab/Windows\n\nYes TFCE will be enabled again, but I don't know when. The main problem is\nthe low speedup compared to randomise, since many clusterings have to be\nperformed. For low cluster defining thresholds (giving large clusters), the\nparallel clustering used in BROCCOLI seems to be slower than in randomise.\n\n\n\n\n\n\n2017-01-11 15:45 GMT+01:00 BertramW \[email protected]\u003e:\n\n\u003e Hi,\n\u003e\n\u003e 1: In NITRC BROCCOLI is specified as ' Operating System: Windows,\n\u003e POSIX/UNIX-like'.\n\u003e How I can get it run in Windows?\n\u003e\n\u003e 2: Running RandomiseGroupLevel I got the message 'TFCE is currently\n\u003e disabled'. Will it be enabled again? If so, when?\n\u003e\n\u003e Best,\n\u003e Bertram\n\u003e\n\u003e —\n\u003e You are receiving this because you are subscribed to this thread.\n\u003e Reply to this email directly, view it on GitHub\n\u003e \u003chttps://github.com/wanderine/BROCCOLI/issues/32\u003e, or mute the thread\n\u003e \u003chttps://github.com/notifications/unsubscribe-auth/AEGryOvT4SuFuBZzaji0oTUNxJ3Mjcsoks5rROsNgaJpZM4LgqJQ\u003e\n\u003e .\n\u003e\n\n\n\n-- \nAnders Eklund, PhD\n"}],"action":{"name":"View Issue","url":"#32 (comment)"}}}

[wanderine]

The mex-files support any OpenCL device (CPU,GPU) for which you have installed an OpenCL driver. I'm not sure which Matlab version that is required. 2017-01-13 19:07 GMT+01:00 BertramW <[email protected]>:

…

body { font-family:'Times New Roman'; font-size:16px} Many thanks for answering so quickly.Do the mex-files support GPUs? If so, which Matlab version is needed?Best,BertramOn Fri, 13 Jan 2017 11:46:49 +0100, Anders Eklund ***@***.***> wrote:For Windows you have to run BROCCOLI through Matlab, as there is no terminal in Windows. Here are some precompiled mex-files https://github.com/wanderine/BROCCOLI/tree/master/compiled/Matlab/Windows Yes TFCE will be enabled again, but I don't know when. The main problem is the low speedup compared to randomise, since many clusterings have to be performed. For low cluster defining thresholds (giving large clusters), the parallel clustering used in BROCCOLI seems to be slower than in randomise. 2017-01-11 15:45 GMT+01:00 BertramW ***@***.***>: > Hi, > > 1: In NITRC BROCCOLI is specified as ' Operating System: Windows, > POSIX/UNIX-like'. > How I can get it run in Windows? > > 2: Running RandomiseGroupLevel I got the message 'TFCE is currently > disabled'. Will it be enabled again? If so, when? > > Best, > Bertram > > — > You are receiving this because you are subscribed to this thread. > Reply to this email directly, view it on GitHub > <#32>, or mute the thread > <https://github.com/notifications/unsubscribe-auth/ AEGryOvT4SuFuBZzaji0oTUNxJ3Mjcsoks5rROsNgaJpZM4LgqJQ> > . > -- Anders Eklund, PhD —You are receiving this because you authored the thread.Reply to this email directly, view it on GitHub, or mute the thread. {"api_version":"1.0","publisher":{"api_key":" 05dde50f1d1a384dd78767c55493e4bb","name":"GitHub"},"entity": {"external_key":"github/wanderine/BROCCOLI","title":" wanderine/BROCCOLI","subtitle":"GitHub repository","main_image_url":" https://cloud.githubusercontent.com/assets/143418/17495839/a5054eac-5d88- 11e6-95fc-7290892c7bb5.png","avatar_image_url":"https:// cloud.githubusercontent.com/assets/143418/15842166/ 7c72db34-2c0b-11e6-9aed-b52498112777.png","action":{"name":"Open in GitHub","url":"https://github.com/wanderine/BROCCOLI"}}," ***@***.*** in #32: For Windows you have to run BROCCOLI through Matlab, as there is no\nterminal in Windows. Here are some precompiled mex-files\n\nhttps://github. com/wanderine/BROCCOLI/tree/master/compiled/Matlab/Windows\n\nYes <http://github.com/wanderine/BROCCOLI/tree/master/compiled/Matlab/Windows%5Cn%5CnYes> TFCE will be enabled again, but I don't know when. The main problem is\nthe low speedup compared to randomise, since many clusterings have to be\nperformed. For low cluster defining thresholds (giving large clusters), the\nparallel clustering used in BROCCOLI seems to be slower than in randomise.\n\n\n\n\n\n\n2017-01-11 15:45 GMT+01:00 BertramW \ ***@***.***\u003e:\n\n\u003e Hi,\n\u003e\n\u003e 1: In NITRC BROCCOLI is specified as ' Operating System: Windows,\n\u003e POSIX/UNIX-like'.\n\u003e How I can get it run in Windows?\n\u003e\n\u003e 2: Running RandomiseGroupLevel I got the message 'TFCE is currently\n\u003e disabled'. Will it be enabled again? If so, when?\n\u003e\n\u003e Best,\n\u003e Bertram\n\u003e\n\u003e —\n\u003e You are receiving this because you are subscribed to this thread.\n\u003e Reply to this email directly, view it on GitHub\n\u003e \u003chttps://github.com/ wanderine/BROCCOLI#32\u003e <http://github.com/wanderine/BROCCOLI/issues/32%5Cu003e>, or mute the thread\n\u003e \u003chttps://github.com/notifications/unsubscribe-auth/ AEGryOvT4SuFuBZzaji0oTUNxJ3Mjcsoks5rROsNgaJpZM4LgqJQ\u003e\n\u003e <http://github.com/notifications/unsubscribe-auth/AEGryOvT4SuFuBZzaji0oTUNxJ3Mjcsoks5rROsNgaJpZM4LgqJQ%5Cu003e%5Cn%5Cu003e> .\n\u003e\n\n\n\n-- \nAnders Eklund, PhD\n"}],"action":{"name":"View Issue","url":"https://github.com/wanderine/BROCCOLI/issues/ 32#issuecomment-272414457"}}} — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#32 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AEGryADnVSXmUYd_brZnbzs3F8VgjAfFks5rR714gaJpZM4LgqJQ> .

-- Anders Eklund, PhD