How to add custom ions for spectrum annotation

[umassspec]

Hi, Bo
I tried to add custom fragment ions for spectrum annotation. But didn't find a way. Is it doable with the current version of PDV?
Thanks!
Xudong

[wenbostar]

What type of custom fragment ions do you want for annotation?

[umassspec]

Thanks for getting back so quickly! I have a couple of biotin and desthiobiotin fragment ions, which I want to label on MS2 spectra automatically. I played with the software and did not find a way. I also did not find instructions in the manual. Thanks, Xudong From: Bo ***@***.***> Sent: Saturday, March 5, 2022 11:58 PM To: wenbostar/PDV ***@***.***> Cc: umassspec ***@***.***>; Author ***@***.***> Subject: Re: [wenbostar/PDV] How to add custom ions for spectrum annotation (Issue #32) *Message sent from a system outside of UConn.* What type of custom fragment ions do you want for annotation? - Reply to this email directly, view it on GitHub<https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fwenbostar%2FPDV%2Fissues%2F32%23issuecomment-1059895289&data=04%7C01%7C%7Cfae3224226cc4ae8e31208d9ff2dd444%7C17f1a87e2a254eaab9df9d439034b080%7C0%7C0%7C637821394621257759%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000&sdata=26UjxTBgjKIXZI6jWbG39ESQ7ZwysLNnG0JOzNRW5cU%3D&reserved=0>, or unsubscribe<https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FALZLVXCKKHGP25ZI5WJIEPLU6Q3LVANCNFSM5QAN6A4A&data=04%7C01%7C%7Cfae3224226cc4ae8e31208d9ff2dd444%7C17f1a87e2a254eaab9df9d439034b080%7C0%7C0%7C637821394621257759%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000&sdata=3DXymDGOlnOPKuAmLRtOZCcZ1GojzzRCmSjhBW8ODyw%3D&reserved=0>. Triage notifications on the go with GitHub Mobile for iOS<https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapps.apple.com%2Fapp%2Fapple-store%2Fid1477376905%3Fct%3Dnotification-email%26mt%3D8%26pt%3D524675&data=04%7C01%7C%7Cfae3224226cc4ae8e31208d9ff2dd444%7C17f1a87e2a254eaab9df9d439034b080%7C0%7C0%7C637821394621257759%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000&sdata=Wi5HWww0s%2BsJk5tWg7hEkI78b1yo6yJVSMO8h7VhSxw%3D&reserved=0> or Android<https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fplay.google.com%2Fstore%2Fapps%2Fdetails%3Fid%3Dcom.github.android%26referrer%3Dutm_campaign%253Dnotification-email%2526utm_medium%253Demail%2526utm_source%253Dgithub&data=04%7C01%7C%7Cfae3224226cc4ae8e31208d9ff2dd444%7C17f1a87e2a254eaab9df9d439034b080%7C0%7C0%7C637821394621257759%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C2000&sdata=G426sofxZYuPwhKzbNM%2FFN1ohajAqUfz5puBFLmWR4g%3D&reserved=0>. You are receiving this because you authored the thread.Message ID: ***@***.******@***.***>>

[KaiLiCn]

Hi Xudong,

Sorry for the late reply. Now PDV doesn't support this function. But I will add this good suggestion to my to-do list. The new version will be published later summer.

Kai