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Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 19 15

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 2

  3. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  4. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

  5. dynamic-foraging-task dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    Python 5 4

  6. exa-spim-hardware exa-spim-hardware Public

    5

Repositories

Showing 10 of 254 repositories
  • lamf_analysis_lims Public

    Dev site for testing analysis pipelines and qc for learning mFISH project. Anything related to 2p data (plus behavior and spatial transcriptomics)

    AllenNeuralDynamics/lamf_analysis_lims’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 2, 2024
  • aind-slims-api Public

    AIND-specific access to data stored in SLIMS

    AllenNeuralDynamics/aind-slims-api’s past year of commit activity
    Python 0 MIT 1 3 2 Updated Oct 2, 2024
  • aind-metadata-upgrader Public

    Upgrade JSON metadata from old versions of aind-data-schema

    AllenNeuralDynamics/aind-metadata-upgrader’s past year of commit activity
    Python 1 MIT 0 4 2 Updated Oct 2, 2024
  • harp.device.treadmill-driver Public

    a Harp-compatible device for controlling an instrumented mouse treadmill

    AllenNeuralDynamics/harp.device.treadmill-driver’s past year of commit activity
    Jupyter Notebook 1 0 11 1 Updated Oct 2, 2024
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 19 MIT 15 35 6 Updated Oct 1, 2024
  • parallax Public

    GUI control software for the Modular Insertion System (MIS)

    AllenNeuralDynamics/parallax’s past year of commit activity
    Python 5 MIT 1 0 2 Updated Oct 1, 2024
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    AllenNeuralDynamics/aind-metadata-mapper’s past year of commit activity
    Python 0 MIT 2 15 3 Updated Oct 1, 2024
  • nmcp-deploy Public
    AllenNeuralDynamics/nmcp-deploy’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 1, 2024
  • Aind.Behavior.Services Public
    AllenNeuralDynamics/Aind.Behavior.Services’s past year of commit activity
    C# 0 MIT 0 21 (1 issue needs help) 2 Updated Oct 1, 2024
  • harp.core.rp2040 Public

    A Harp core implementation on the RP2040

    AllenNeuralDynamics/harp.core.rp2040’s past year of commit activity
    C++ 3 MIT 0 17 0 Updated Oct 1, 2024
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