The repository contains the bioinformatic workflow used for extraction of viral elements from Phaeocystis genomes for the paper Roitman et al (2023) "Infection cycle and phylogeny of a Polinton-like virus with a virophage lifestyle infecting Phaeocystis globosa".
The workflow is built using snakemake. Dependencies are under the control of conda (see --use-conda). Run as snakemake --cores 10 --use-conda.