maint: update deployment code

.github/workflows/dockerimg.yaml

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+name: '[build] docker image'
+
+on:
+  push:
+    branches:
+    # - "master"
+    - "*"
+
+env:
+  DOCKER_REPO: docker-registry.ebrains.eu
+  DOCKER_NS: voluba
+  DOCKER_IMG: voluba-linear-backend
+  DOCKER_TAG: latest
+
+jobs:
+  build-image:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+    - run: |
+        docker_tag=${{ env.DOCKER_REPO }}/${{ env.DOCKER_NS }}/${{ env.DOCKER_IMG }}:${{ env.DOCKER_TAG }}
+        echo docker_tag=$docker_tag
+        docker build -t $docker_tag .
+
+        echo DOCKER_BUILT_TAG=$docker_tag >> $GITHUB_ENV
+
+    - name: 'Push to docker registry'
+      run: |
+        echo "Login to docker registry"
+        docker login \
+          -u '${{ secrets.EBRAINS_DOCKER_REG_USER }}' \
+          -p '${{ secrets.EBRAINS_DOCKER_REG_TOKEN }}' \
+          docker-registry.ebrains.eu
+        echo "Pushing $DOCKER_BUILT_TAG"
+        docker push $DOCKER_BUILT_TAG

.helm/README.md

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+# Deployment
+
+This directory describes how voluba linear backend is deployed on ebrains infrastructure. 
+
+## Provisioned service
+
+The services provided by ebrains, used in the deployment:
+
+- docker registry 
+- rancher cluster
+
+## Requirements
+
+- helm
+
+## Scripts
+
+At root directory (i.e. parent of )
+
+```bash
+helm install voluba-backend .helm/voluba-linear-backend
+```

.helm/adhoc/configmap.yaml

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+apiVersion: v1
+data:
+  config.py: |
+    CORS_ORIGINS = '*'
+    PROXY_FIX = {
+        'x_for': 1,
+        'x_host': 1,
+        'x_port': 1,
+        'x_proto': 1,
+    }
+kind: ConfigMap
+metadata:
+  name: instance-dir

.helm/adhoc/old-ingress.yaml

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+apiVersion: networking.k8s.io/v1
+kind: Ingress
+metadata:
+  labels:
+    name: voluba-old-lbe-hostname-ingress
+  name: voluba-old-lbe-hostname-ingress
+spec:
+  rules:
+  - host: voluba-linear-backend.apps.hbp.eu
+    http:
+      paths:
+      - backend:
+          service:
+            name: voluba-backend
+            port:
+              number: 8080
+        path: /
+        pathType: Prefix
+  tls:
+  - hosts:
+    - voluba-linear-backend.apps.hbp.eu
+    secretName: voluba-lbe-old-hostname-secret

.helm/voluba-linear-backend/.helmignore

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+# Patterns to ignore when building packages.
+# This supports shell glob matching, relative path matching, and
+# negation (prefixed with !). Only one pattern per line.
+.DS_Store
+# Common VCS dirs
+.git/
+.gitignore
+.bzr/
+.bzrignore
+.hg/
+.hgignore
+.svn/
+# Common backup files
+*.swp
+*.bak
+*.tmp
+*.orig
+*~
+# Various IDEs
+.project
+.idea/
+*.tmproj
+.vscode/

.helm/voluba-linear-backend/Chart.yaml

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+apiVersion: v2
+name: voluba-linear-backend
+description: A Helm chart for Kubernetes
+
+# A chart can be either an 'application' or a 'library' chart.
+#
+# Application charts are a collection of templates that can be packaged into versioned archives
+# to be deployed.
+#
+# Library charts provide useful utilities or functions for the chart developer. They're included as
+# a dependency of application charts to inject those utilities and functions into the rendering
+# pipeline. Library charts do not define any templates and therefore cannot be deployed.
+type: application
+
+# This is the chart version. This version number should be incremented each time you make changes
+# to the chart and its templates, including the app version.
+# Versions are expected to follow Semantic Versioning (https://semver.org/)
+version: 0.1.0
+
+# This is the version number of the application being deployed. This version number should be
+# incremented each time you make changes to the application. Versions are not expected to
+# follow Semantic Versioning. They should reflect the version the application is using.
+# It is recommended to use it with quotes.
+appVersion: "0.2.0.dev0"

.helm/voluba-linear-backend/templates/NOTES.txt

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+1. Get the application URL by running these commands:
+{{- if .Values.ingress.enabled }}
+{{- range $host := .Values.ingress.hosts }}
+  {{- range .paths }}
+  http{{ if $.Values.ingress.tls }}s{{ end }}://{{ $host.host }}{{ .path }}
+  {{- end }}
+{{- end }}
+{{- else if contains "NodePort" .Values.service.type }}
+  export NODE_PORT=$(kubectl get --namespace {{ .Release.Namespace }} -o jsonpath="{.spec.ports[0].nodePort}" services {{ include "voluba-linear-backend.fullname" . }})
+  export NODE_IP=$(kubectl get nodes --namespace {{ .Release.Namespace }} -o jsonpath="{.items[0].status.addresses[0].address}")
+  echo http://$NODE_IP:$NODE_PORT
+{{- else if contains "LoadBalancer" .Values.service.type }}
+     NOTE: It may take a few minutes for the LoadBalancer IP to be available.
+           You can watch the status of by running 'kubectl get --namespace {{ .Release.Namespace }} svc -w {{ include "voluba-linear-backend.fullname" . }}'
+  export SERVICE_IP=$(kubectl get svc --namespace {{ .Release.Namespace }} {{ include "voluba-linear-backend.fullname" . }} --template "{{"{{ range (index .status.loadBalancer.ingress 0) }}{{.}}{{ end }}"}}")
+  echo http://$SERVICE_IP:{{ .Values.service.port }}
+{{- else if contains "ClusterIP" .Values.service.type }}
+  export POD_NAME=$(kubectl get pods --namespace {{ .Release.Namespace }} -l "app.kubernetes.io/name={{ include "voluba-linear-backend.name" . }},app.kubernetes.io/instance={{ .Release.Name }}" -o jsonpath="{.items[0].metadata.name}")
+  export CONTAINER_PORT=$(kubectl get pod --namespace {{ .Release.Namespace }} $POD_NAME -o jsonpath="{.spec.containers[0].ports[0].containerPort}")
+  echo "Visit http://127.0.0.1:8080 to use your application"
+  kubectl --namespace {{ .Release.Namespace }} port-forward $POD_NAME 8080:$CONTAINER_PORT
+{{- end }}

.helm/voluba-linear-backend/templates/_helpers.tpl

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+{{/*
+Expand the name of the chart.
+*/}}
+{{- define "voluba-linear-backend.name" -}}
+{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" }}
+{{- end }}
+
+{{/*
+Create a default fully qualified app name.
+We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
+If release name contains chart name it will be used as a full name.
+*/}}
+{{- define "voluba-linear-backend.fullname" -}}
+{{- if .Values.fullnameOverride }}
+{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" }}
+{{- else }}
+{{- $name := default .Chart.Name .Values.nameOverride }}
+{{- if contains $name .Release.Name }}
+{{- .Release.Name | trunc 63 | trimSuffix "-" }}
+{{- else }}
+{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" }}
+{{- end }}
+{{- end }}
+{{- end }}
+
+{{/*
+Create chart name and version as used by the chart label.
+*/}}
+{{- define "voluba-linear-backend.chart" -}}
+{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" }}
+{{- end }}
+
+{{/*
+Common labels
+*/}}
+{{- define "voluba-linear-backend.labels" -}}
+helm.sh/chart: {{ include "voluba-linear-backend.chart" . }}
+{{ include "voluba-linear-backend.selectorLabels" . }}
+{{- if .Chart.AppVersion }}
+app.kubernetes.io/version: {{ .Chart.AppVersion | quote }}
+{{- end }}
+app.kubernetes.io/managed-by: {{ .Release.Service }}
+{{- end }}
+
+{{/*
+Selector labels
+*/}}
+{{- define "voluba-linear-backend.selectorLabels" -}}
+app.kubernetes.io/name: {{ include "voluba-linear-backend.name" . }}
+app.kubernetes.io/instance: {{ .Release.Name }}
+{{- end }}
+
+{{/*
+Create the name of the service account to use
+*/}}
+{{- define "voluba-linear-backend.serviceAccountName" -}}
+{{- if .Values.serviceAccount.create }}
+{{- default (include "voluba-linear-backend.fullname" .) .Values.serviceAccount.name }}
+{{- else }}
+{{- default "default" .Values.serviceAccount.name }}
+{{- end }}
+{{- end }}

.helm/voluba-linear-backend/templates/deployment.yaml

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+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: {{ include "voluba-linear-backend.fullname" . }}
+  labels:
+    {{- include "voluba-linear-backend.labels" . | nindent 4 }}
+spec:
+  {{- if not .Values.autoscaling.enabled }}
+  replicas: {{ .Values.replicaCount }}
+  {{- end }}
+  selector:
+    matchLabels:
+      {{- include "voluba-linear-backend.selectorLabels" . | nindent 6 }}
+  template:
+    metadata:
+      {{- with .Values.podAnnotations }}
+      annotations:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      labels:
+        {{- include "voluba-linear-backend.labels" . | nindent 8 }}
+        {{- with .Values.podLabels }}
+        {{- toYaml . | nindent 8 }}
+        {{- end }}
+    spec:
+      {{- with .Values.imagePullSecrets }}
+      imagePullSecrets:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      serviceAccountName: {{ include "voluba-linear-backend.serviceAccountName" . }}
+      securityContext:
+        {{- toYaml .Values.podSecurityContext | nindent 8 }}
+      containers:
+        - name: {{ .Chart.Name }}
+          securityContext:
+            {{- toYaml .Values.securityContext | nindent 12 }}
+          image: "{{ .Values.image.repository }}:{{ .Values.image.tag | default .Chart.AppVersion }}"
+          imagePullPolicy: {{ .Values.image.pullPolicy }}
+          ports:
+            - name: http
+              containerPort: {{ .Values.service.port }}
+              protocol: TCP
+          livenessProbe:
+            {{- toYaml .Values.livenessProbe | nindent 12 }}
+          readinessProbe:
+            {{- toYaml .Values.readinessProbe | nindent 12 }}
+          resources:
+            {{- toYaml .Values.resources | nindent 12 }}
+          {{- with .Values.volumeMounts }}
+          volumeMounts:
+            {{- toYaml . | nindent 12 }}
+          {{- end }}
+      {{- with .Values.volumes }}
+      volumes:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.nodeSelector }}
+      nodeSelector:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.affinity }}
+      affinity:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}
+      {{- with .Values.tolerations }}
+      tolerations:
+        {{- toYaml . | nindent 8 }}
+      {{- end }}

.helm/voluba-linear-backend/templates/hpa.yaml

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+{{- if .Values.autoscaling.enabled }}
+apiVersion: autoscaling/v2
+kind: HorizontalPodAutoscaler
+metadata:
+  name: {{ include "voluba-linear-backend.fullname" . }}
+  labels:
+    {{- include "voluba-linear-backend.labels" . | nindent 4 }}
+spec:
+  scaleTargetRef:
+    apiVersion: apps/v1
+    kind: Deployment
+    name: {{ include "voluba-linear-backend.fullname" . }}
+  minReplicas: {{ .Values.autoscaling.minReplicas }}
+  maxReplicas: {{ .Values.autoscaling.maxReplicas }}
+  metrics:
+    {{- if .Values.autoscaling.targetCPUUtilizationPercentage }}
+    - type: Resource
+      resource:
+        name: cpu
+        target:
+          type: Utilization
+          averageUtilization: {{ .Values.autoscaling.targetCPUUtilizationPercentage }}
+    {{- end }}
+    {{- if .Values.autoscaling.targetMemoryUtilizationPercentage }}
+    - type: Resource
+      resource:
+        name: memory
+        target:
+          type: Utilization
+          averageUtilization: {{ .Values.autoscaling.targetMemoryUtilizationPercentage }}
+    {{- end }}
+{{- end }}

.helm/voluba-linear-backend/templates/ingress.yaml

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+{{- if .Values.ingress.enabled -}}
+{{- $fullName := include "voluba-linear-backend.fullname" . -}}
+{{- $svcPort := .Values.service.port -}}
+{{- if and .Values.ingress.className (not (semverCompare ">=1.18-0" .Capabilities.KubeVersion.GitVersion)) }}
+  {{- if not (hasKey .Values.ingress.annotations "kubernetes.io/ingress.class") }}
+  {{- $_ := set .Values.ingress.annotations "kubernetes.io/ingress.class" .Values.ingress.className}}
+  {{- end }}
+{{- end }}
+{{- if semverCompare ">=1.19-0" .Capabilities.KubeVersion.GitVersion -}}
+apiVersion: networking.k8s.io/v1
+{{- else if semverCompare ">=1.14-0" .Capabilities.KubeVersion.GitVersion -}}
+apiVersion: networking.k8s.io/v1beta1
+{{- else -}}
+apiVersion: extensions/v1beta1
+{{- end }}
+kind: Ingress
+metadata:
+  name: {{ $fullName }}
+  labels:
+    {{- include "voluba-linear-backend.labels" . | nindent 4 }}
+  {{- with .Values.ingress.annotations }}
+  annotations:
+    {{- toYaml . | nindent 4 }}
+  {{- end }}
+spec:
+  {{- if and .Values.ingress.className (semverCompare ">=1.18-0" .Capabilities.KubeVersion.GitVersion) }}
+  ingressClassName: {{ .Values.ingress.className }}
+  {{- end }}
+  {{- if .Values.ingress.tls }}
+  tls:
+    {{- range .Values.ingress.tls }}
+    - hosts:
+        {{- range .hosts }}
+        - {{ . | quote }}
+        {{- end }}
+      secretName: {{ .secretName }}
+    {{- end }}
+  {{- end }}
+  rules:
+    {{- range .Values.ingress.hosts }}
+    - host: {{ .host | quote }}
+      http:
+        paths:
+          {{- range .paths }}
+          - path: {{ .path }}
+            {{- if and .pathType (semverCompare ">=1.18-0" $.Capabilities.KubeVersion.GitVersion) }}
+            pathType: {{ .pathType }}
+            {{- end }}
+            backend:
+              {{- if semverCompare ">=1.19-0" $.Capabilities.KubeVersion.GitVersion }}
+              service:
+                name: {{ $fullName }}
+                port:
+                  number: {{ $svcPort }}
+              {{- else }}
+              serviceName: {{ $fullName }}
+              servicePort: {{ $svcPort }}
+              {{- end }}
+          {{- end }}
+    {{- end }}
+{{- end }}