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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 74 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 32 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 26 3

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 24 11

Repositories

Showing 10 of 265 repositories
  • jacs-storage Public

    JADE file storage services

    JaneliaSciComp/jacs-storage’s past year of commit activity
    Java 0 BSD-3-Clause 0 0 1 Updated Oct 2, 2024
  • EM_recon_pipeline Public

    Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

    JaneliaSciComp/EM_recon_pipeline’s past year of commit activity
    Python 3 BSD-3-Clause 2 0 2 Updated Oct 2, 2024
  • JaneliaDataStandards Public

    A pilot experiment to dissminate information about Janelia's biomaging data formats.

    JaneliaSciComp/JaneliaDataStandards’s past year of commit activity
    HTML 10 BSD-3-Clause 2 2 3 Updated Oct 2, 2024
  • zarrcade Public
    JaneliaSciComp/zarrcade’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Oct 2, 2024
  • neuronbridge Public

    EM/LM neuron search

    JaneliaSciComp/neuronbridge’s past year of commit activity
    JavaScript 4 BSD-3-Clause 1 0 0 Updated Oct 1, 2024
  • neuronbridge-data Public

    Versioned NeuronBridge data files deployed to S3 buckets

    JaneliaSciComp/neuronbridge-data’s past year of commit activity
    Shell 0 BSD-3-Clause 0 0 0 Updated Oct 1, 2024
  • BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    JaneliaSciComp/BigStitcher-Spark’s past year of commit activity
    Java 17 BSD-2-Clause 10 14 1 Updated Oct 1, 2024
  • jeiss_fibsem_labview_control Public
    JaneliaSciComp/jeiss_fibsem_labview_control’s past year of commit activity
    LabVIEW 2 BSD-3-Clause 0 6 0 Updated Oct 1, 2024
  • ShroffCelegansModels.jl Public
    JaneliaSciComp/ShroffCelegansModels.jl’s past year of commit activity
    Julia 2 MIT 0 0 32 Updated Oct 1, 2024
  • videoAnnotation Public
    JaneliaSciComp/videoAnnotation’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 0 0 Updated Sep 30, 2024
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