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FragPipe-PDV: Customized version of PDV for FragPipe.

FragPipe-PDV is a customized version of PDV for FragPipe. I changed the GUI layout, optimized the database structure, and implemented new functions fitting FragPipe results especially.

Installation

The FragPipe-PDV packages are free to download at https://github.com/Nesvilab/FragPipe-PDV/releases.

Ways to run

Run in FragPipe (Recommended)

The FragPipe-PDV has already been released together with FragPipe. However, the latest version of FragPipe-PDV can be downloaded here and updated manually in FragPipe.

(1) Open the tools in your FragPipe folder.

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(2) Open the FP-PDV in the tools folder.

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(3) Copy the latest FragPipe-PDV package and replace the old one in the FP-PDV folder.

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Citation

To cite the PDV package in publications, please use:

Li, K., et al. "PDV: an integrative proteomics data viewer." Bioinformatics, Volume 35, Issue 7, 01 April 2019, Pages 1249–1251. https://doi.org/10.1093/bioinformatics/bty770