fix region import ambiguous names

aertslab · Sep 18, 2024 · a79bab9 · a79bab9
1 parent 9f737da
commit a79bab9
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/.gitignore b/.gitignore
@@ -12,3 +12,4 @@ node_modules
 .DS_Store
 ._.DS_Store
 docs/tutorials/mouse_biccn.ipynb
+docs/tutorials/.ipynb_checkpoints
diff --git a/src/crested/_io.py b/src/crested/_io.py
@@ -110,7 +110,7 @@ def _read_consensus_regions(
 ) -> pd.DataFrame:
     """Read consensus regions BED file and filter out regions not within chromosomes."""
     consensus_peaks = pd.read_csv(
-        regions_file, sep="\t", header=None, usecols=[0, 1, 2]
+        regions_file, sep="\t", header=None, usecols=[0, 1, 2], dtype={0: str, 1: 'Int32', 2: 'Int32'}
     )
     consensus_peaks["region"] = (
         consensus_peaks[0].astype(str)