ci: configure github actions

.travis/check_pylint_diff → .github/workflows/check_pylint_diff.sh

@@ -88,8 +88,8 @@ CURRENT_COMMIT=$(git rev-parse HEAD)
 if [ "$ARG1"  ]; then
     PREVIOUS_COMMIT=$(git merge-base HEAD "$ARG1")
 else
-    PREVIOUS_COMMIT=$(git show --pretty=raw HEAD |
-                      awk '/^parent /{ print $2; exit }')
+    PREVIOUS_COMMIT=$(git show -s --pretty=%P "$CURRENT_COMMIT")
+    # PREVIOUS_COMMIT=$(git show --pretty=raw HEAD | awk '/^parent /{ print $2; exit }')
 fi
 
 echo

.github/workflows/clean_up_job.yml

@@ -0,0 +1,14 @@
+name: Cleanup job
+
+on: [push]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Cleanup process
+        uses: rokroskar/workflow-run-cleanup-action@master
+        env:
+          GITHUB_TOKEN: ${{ secrets.BIOLAB_HELPER_TOKEN }}
+      if: !startsWith(github.ref, 'refs/tags/') && github.ref != 'refs/heads/master'

.github/workflows/doc_job.yml

@@ -0,0 +1,35 @@
+name: Documentation
+
+on:
+  # Trigger the workflow on push or pull request, but only for the master branch
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+
+jobs:
+  build:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: False
+      matrix:
+        python: [3.7]
+        os: [ubuntu-18.04]
+
+    steps:
+      - uses: actions/checkout@v2
+      - name: Setup Python
+        uses: actions/setup-python@v1
+        with:
+          python-version: ${{ matrix.python }}
+
+      - name: Install linux system dependencies
+        run: sudo apt-get install -y libxkbcommon-x11-0
+
+      - name: Install Tox
+        run: pip install tox
+
+      - name: Build documentation
+        run:  xvfb-run -a -s "-screen 0 1280x1024x24" tox -e build_doc

.github/workflows/lint_job.yml

@@ -0,0 +1,34 @@
+name: Lint Job
+
+on:
+  # Trigger the workflow on push or pull request, but only for the master branch
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+
+jobs:
+  build:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: False
+      matrix:
+        python: [3.7]
+        os: [ubuntu-18.04]
+
+    steps:
+      - uses: actions/checkout@v2
+        with:
+          fetch-depth: '2'
+      - name: Setup Python
+        uses: actions/setup-python@v1
+        with:
+          python-version: ${{ matrix.python }}
+
+      - name: Install Tox
+        run: pip install tox
+
+      - name: Run Pylint
+        run:  tox -e pylint-ci

.github/workflows/linux_job.yml

@@ -0,0 +1,64 @@
+name: Linux Job
+
+on:
+  # Trigger the workflow on push or pull request, but only for the master branch
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+
+jobs:
+  build:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: False
+      matrix:
+        python: [3.6, 3.7]
+        os: [ubuntu-18.04]
+
+    services:
+      postgres:
+        image: orangedm/postgres:11
+        env:
+          POSTGRES_USER: postgres_user
+          POSTGRES_PASSWORD: postgres_password
+          POSTGRES_DB: postgres_db
+        ports:
+          - 5432:5432
+        options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
+
+      SQLServer:
+        image: mcr.microsoft.com/mssql/server:2017-latest
+        env:
+          ACCEPT_EULA: Y
+          SA_PASSWORD: sqlServerPassw0rd
+        ports:
+          - 1433:1433
+
+    steps:
+      - uses: actions/checkout@v2
+      - name: Setup Python
+        uses: actions/setup-python@v1
+        with:
+          python-version: ${{ matrix.python }}
+
+      - name: Install linux system dependencies
+        run: sudo apt-get install -y libxkbcommon-x11-0  # for PyQt 5.12
+
+      - name: Install Tox
+        run: pip install tox
+
+      - name: Run Tox
+        run: xvfb-run -a -s "-screen 0 1280x1024x24" tox -e coverage
+        env:
+          ORANGE_TEST_DB_URI: postgres://postgres_user:postgres_password@localhost:5432/postgres_db|mssql://SA:sqlServerPassw0rd@localhost:1433
+
+      - name: Upload code coverage
+        if: matrix.python == '3.7'
+        run: |
+          pip install codecov
+          codecov
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}