added sf to suggests. Final checks before update.

DESCRIPTION

@@ -2,7 +2,7 @@ Type: Package
 Package: SCpubr
 Title: Generate Publication Ready Visualizations of Single Cell
     Transcriptomics Data
-Version: 2.0.1.9000
+Version: 2.0.2
 Authors@R: 
     person("Enrique", "Blanco-Carmona", , "[email protected]", role = c("cre", "aut"),
            comment = c(ORCID = "0000-0002-1208-1691"))
@@ -67,6 +67,7 @@ Suggests:
     scattermore,
     Seurat,
     SeuratObject,
+    sf,
     stringr,
     svglite,
     testthat (>= 3.0.0),

NAMESPACE

@@ -1,6 +1,5 @@
 # Generated by roxygen2: do not edit by hand
 
-export(do_AffinityAnalysisPlot)
 export(do_AlluvialPlot)
 export(do_BarPlot)
 export(do_BeeSwarmPlot)
@@ -10,7 +9,6 @@ export(do_ChordDiagramPlot)
 export(do_ColorPalette)
 export(do_CopyNumberVariantPlot)
 export(do_CorrelationPlot)
-export(do_DiffusionMapPlot)
 export(do_DimPlot)
 export(do_DotPlot)
 export(do_EnrichmentHeatmap)
@@ -20,17 +18,11 @@ export(do_FunctionalAnnotationPlot)
 export(do_GeyserPlot)
 export(do_GroupedGOTermPlot)
 export(do_GroupwiseDEPlot)
-export(do_LigandReceptorPlot)
-export(do_LoadingsPlot)
-export(do_MetadataPlot)
 export(do_NebulosaPlot)
 export(do_PathwayActivityPlot)
 export(do_RidgePlot)
-export(do_SCEnrichmentHeatmap)
-export(do_SCExpressionHeatmap)
 export(do_TFActivityPlot)
 export(do_TermEnrichmentPlot)
 export(do_ViolinPlot)
 export(do_VolcanoPlot)
 export(package_report)
-export(save_Plot)

R/do_FeaturePlot.R

@@ -13,7 +13,7 @@
 #' @param group.by.cell_borders.alpha \strong{\code{\link[base]{numeric}}} | Controls the transparency of the new borders drawn by \strong{\code{group.by.cell_borders}}.
 #' @param symmetry.type \strong{\code{\link[base]{character}}} | Type of symmetry to be enforced. One of:
 #' \itemize{
-#'   \item \emph{\code{absolute}}: The highest absolute value will be taken into a account to generate the color scale ranging from [-value, value]. Works after \strong{\code{min.cutoff}} and \strong{\code{max.cutoff}}.
+#'   \item \emph{\code{absolute}}: The highest absolute value will be taken into a account to generate the color scale. Works after \strong{\code{min.cutoff}} and \strong{\code{max.cutoff}}.
 #'   \item \emph{\code{centered}}: Centers the scale around the provided value in \strong{\code{symmetry.center}}. Works after \strong{\code{min.cutoff}} and \strong{\code{max.cutoff}}.
 #' }
 #' @param symmetry.center \strong{\code{\link[base]{numeric}}} | Value upon which the scale will be centered.

cran-comments.md

@@ -1,19 +1,5 @@
 # Submission version 2.0.1
-Fixed Startup messages and loading time at startup.
-
-The package no longer calls for any mirrors to check package versions. I have removed every instance of this.
-
-While `devtools::check` returns no warnings, `R CMD CHECK` does return:
-─  checking package dependencies ...Warning: unable to access index for repository https://bioconductor.org/packages/3.15/bioc/src/contrib: (3s)
-     cannot open URL 'https://bioconductor.org/packages/3.15/bioc/src/contrib/PACKAGES'
-   Warning: unable to access index for repository https://bioconductor.org/packages/3.15/data/annotation/src/contrib:
-     cannot open URL 'https://bioconductor.org/packages/3.15/data/annotation/src/contrib/PACKAGES'
-   Warning: unable to access index for repository https://bioconductor.org/packages/3.15/data/experiment/src/contrib:
-     cannot open URL 'https://bioconductor.org/packages/3.15/data/experiment/src/contrib/PACKAGES'
-
-For which I am unable to locate the exact reason why it only appears there. Would it be possible to receive guidance on this if this
-turns out to be a real problem?
-
+Fixed Check errors regarding the archive of maptools, rgdal and rgeos.
 
 ## `devtools` R CMD check results
 There were no ERRORs, WARNINGs or NOTEs.