--- re-building ‘GeneTonic_manual.Rmd’ using rmarkdown

processing vignette 'GeneTonic_manual.Rmd' failed with diagnostics:

Vignette re-building failed.

Process completed with exit code 1.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, actions/cache@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

cairo 1.18.2 is already installed and up-to-date. To reinstall 1.18.2, run: brew reinstall cairo

macOS's Gatekeeper has been disabled for this Cask

harfbuzz 9.0.0 is already installed and up-to-date. To reinstall 9.0.0, run: brew reinstall harfbuzz

fribidi 1.0.15 is already installed and up-to-date. To reinstall 1.0.15, run: brew reinstall fribidi