adding Le Petit Prince to public repo

le_petit_prince/README.md

@@ -0,0 +1,61 @@
+## Display settings
+
+* Clone the primary display to the slave monitor.
+* Display resolution - 1920 x 1080, refresh rate - 60 Hz.
+
+## How to run
+
+* Download the audio files (`.wav` files with suffix `task-lppFR`) from OpenNeuro: https://openneuro.org/datasets/ds003643/versions/2.0.1
+* Print the `protocol/questions_reponses_a_imprimer.pdf` file to mark participant's answers after each run
+* Go into the task folder:
+
+	```
+	$ cd le_petit_prince/protocol
+	```
+
+### Practice
+
+* No practice
+
+### Scanner task
+
+* Run the script `run-lepetitprince-mri.sh` as follows:
+
+	```
+	$ sh run-lepetitprince-mri.sh
+	```
+
+* Select the run and press Enter.
+
+* Ask the questions after each run and mark the answers on the printed sheet. Open the file `questions_a_presenter.pdf` for the participant with the command shown, eg.:
+
+	```
+    $ evince -s -p 4 questions_a_presenter.pdf
+	```
+
+* This would open the pdf at page 4 after run 1 and similarly, prompts after each run show corresponding page number in the pdf.
+
+## How to quit
+
+Don't. (`Ctrl + C` in emergency)
+
+## Responses
+
+* No responses except for the verbal ones after each acquisition run
+
+## Design
+
+* 2 sessions
+* 5 runs (session 1) + 4 runs and 1 localizer (session 2)
+
+## Software info
+
+* Python 3.8.5, Expyriment 0.10.0.
+* Primary script `run-lepetitprince-mri.sh`
+* Secondary scripts `lepp_mri.py` for runs 1-9 and `localizer/localizer-speech.py` for the localizer.
+
+## Other info
+
+* Specified paths and scripts were originally run and tested on Ubuntu OS, so might need mods for running on Windows OS.
+* `instructions_for_participants` contain original instructions in French and their English translations (from Google Translate) with `EN_` prefix
+* same goes for `protocol/questions_reponses_a_imprimer.pdf` and `protocol/questions_a_presenter.pdf`

le_petit_prince/localizer/list.csv

@@ -0,0 +1,73 @@
+subj,ntrial,cond,sent_dur,fname,sent_onset
+1,1,french,1948,localizer_01A.wav,2000
+1,2,french,2516,localizer_01B.wav,4448
+1,3,french,1640,localizer_01C.wav,7464
+1,4,control,2358,localizer_r_02A.wav,15104
+1,5,control,3094,localizer_r_02B.wav,17962
+1,6,control,2139,localizer_r_02C.wav,21556
+1,7,french,2292,localizer_03A.wav,29695
+1,8,french,3145,localizer_03B.wav,32487
+1,9,french,2227,localizer_03C.wav,36132
+1,10,control,2013,localizer_r_04A.wav,44359
+1,11,control,2674,localizer_r_04B.wav,46872
+1,12,control,1696,localizer_r_04C.wav,50046
+1,13,french,2805,localizer_05A.wav,57742
+1,14,french,2386,localizer_05B.wav,61047
+1,15,french,2400,localizer_05C.wav,63933
+1,16,control,2241,localizer_r_06A.wav,72333
+1,17,control,2455,localizer_r_06B.wav,75074
+1,18,control,2521,localizer_r_06C.wav,78029
+1,19,french,2288,localizer_07A.wav,86550
+1,20,french,2292,localizer_07B.wav,89338
+1,21,french,2115,localizer_07C.wav,92130
+1,22,control,2698,localizer_r_08A.wav,100245
+1,23,control,3028,localizer_r_08B.wav,103443
+1,24,control,2311,localizer_r_08C.wav,106971
+1,25,french,2260,localizer_09A.wav,115282
+1,26,french,2842,localizer_09B.wav,118042
+1,27,french,1519,localizer_09C.wav,121384
+1,28,control,2609,localizer_r_10A.wav,128903
+1,29,control,2959,localizer_r_10B.wav,132012
+1,30,control,2288,localizer_r_10C.wav,135471
+1,31,french,1924,localizer_11A.wav,143759
+1,32,french,2656,localizer_11B.wav,146183
+1,33,french,1924,localizer_11C.wav,149339
+1,34,control,1948,localizer_r_01A.wav,157263
+1,35,control,2516,localizer_r_01B.wav,159711
+1,36,control,1640,localizer_r_01C.wav,162727
+1,37,control,2260,localizer_r_09A.wav,170367
+1,38,control,2842,localizer_r_09B.wav,173127
+1,39,control,1519,localizer_r_09C.wav,176469
+1,40,french,2358,localizer_02A.wav,183988
+1,41,french,3094,localizer_02B.wav,186846
+1,42,french,2139,localizer_02C.wav,190440
+1,43,control,2292,localizer_r_03A.wav,198579
+1,44,control,3145,localizer_r_03B.wav,201371
+1,45,control,2227,localizer_r_03C.wav,205016
+1,46,french,2013,localizer_04A.wav,213243
+1,47,french,2674,localizer_04B.wav,215756
+1,48,french,1696,localizer_04C.wav,218930
+1,49,control,2805,localizer_r_05A.wav,226626
+1,50,control,2386,localizer_r_05B.wav,229931
+1,51,control,2400,localizer_r_05C.wav,232817
+1,52,french,2241,localizer_06A.wav,241217
+1,53,french,2455,localizer_06B.wav,243958
+1,54,french,2521,localizer_06C.wav,246913
+1,55,control,2288,localizer_r_07A.wav,255434
+1,56,control,2292,localizer_r_07B.wav,258222
+1,57,control,2115,localizer_r_07C.wav,261014
+1,58,french,2609,localizer_10A.wav,269129
+1,59,french,2959,localizer_10B.wav,272238
+1,60,french,2288,localizer_10C.wav,275697
+1,61,control,1924,localizer_r_11A.wav,283985
+1,62,control,2656,localizer_r_11B.wav,286409
+1,63,control,1924,localizer_r_11C.wav,289565
+1,64,french,2111,localizer_12A.wav,297489
+1,65,french,1761,localizer_12B.wav,300100
+1,66,french,1701,localizer_12C.wav,302361
+1,67,french,2698,localizer_08A.wav,310062
+1,68,french,3028,localizer_08B.wav,313260
+1,69,french,2311,localizer_08C.wav,316788
+1,70,control,2111,localizer_r_12A.wav,325099
+1,71,control,1761,localizer_r_12B.wav,327710
+1,72,control,1701,localizer_r_12C.wav,329971

le_petit_prince/localizer/localizer-speech.py

@@ -0,0 +1,142 @@
+#! /usr/bin/env python
+# updated: <2016-02-04 Esther LIN>
+# -*- coding: utf-8 -*-
+
+import pandas as pd
+import os.path as op
+import sys
+import expyriment
+from expyriment import design, control, stimuli, io, misc
+import pygame
+
+pygame.init()
+
+
+'''
+sent1 = stimuli.Audio("fr_localizer_03_22050.wav")
+sent1.preload()
+sent1.present()
+'''
+
+if len(sys.argv) < 2:
+    print(sys.argv[0] + " csvfile")
+    print("The csvfile must contained the list of stimuli and onset times")
+    sys.exit()
+else:
+    stimuli_table = sys.argv[1]
+
+exp = design.Experiment(name="bilingue_localizer")
+
+# comment out the following two lines if running the real experiment:
+control.set_develop_mode(True)
+control.defaults.open_gl = 2
+
+'''
+FIXATION_DURATION = 1000
+WORD_DURATION = 300
+BLOC_DURATION = 6000
+RESPONSE_KEYS = [misc.constants.K_b, misc.constants.K_y]
+MAX_RESPONSE_DURATION = 1000  # need to be less than (900 + min ITI) 
+'''
+
+##
+control.initialize(exp)
+
+## load the stimuli table into a block of trials
+stim_tbl = pd.read_csv(stimuli_table)
+
+block = design.Block(name="block1")
+
+trial_items = []
+
+for (i, stim_info) in stim_tbl.iterrows():
+    trial = design.Trial()
+    trial.set_factor("subj", stim_info.subj)
+    trial.set_factor("nbloc", stim_info.nbloc)
+    trial.set_factor("langue", stim_info.langue)
+    trial.set_factor("sent_onset", stim_info.sent_onset)
+    trial.set_factor("sent_dur", stim_info.sent_dur)
+    trial.set_factor("stims", stim_info.fname)    
+
+
+
+    sound_fnames = [str("./sound_files/"+stim_info['fname'])]
+    trial_items.append(sound_fnames)
+    # transform the strings into surfaces to be blit on the screen
+    for w in sound_fnames:
+        stim = stimuli.Audio(w)
+        trial.add_stimulus(stim)
+    block.add_trial(trial)
+
+exp.add_block(block)  # note that there is only one block in this experiment
+
+exp.data_variable_names = ["subj", "nbloc", "langue", "sent_onset", 
+                           "real_sentence_onset_before","real_sentence_onset_after","sent_dur","filename"]
+
+### A few useful objects and functions 
+
+## define fixation crosses
+fixcrossGreen = stimuli.FixCross(size=(45, 45), line_width=5,
+                                 colour=(0, 255, 0))
+fixcrossGreen.preload()
+
+fixcrossGrey = stimuli.FixCross(size=(45, 45), line_width=3,
+                                colour=(192, 192, 192))
+fixcrossGrey.preload()
+
+'''
+http://www.rapidtables.com/web/color/silver-color.htm
+lightgray	rgb(211,211,211)
+silver	rgb(192,192,192)
+darkgray	rgb(169,169,169)
+gray       rgb(128,128,128)
+'''
+
+
+def clear_screen():
+    exp.screen.clear()
+    exp.screen.update()
+
+
+def wait_for_MRI_synchro():
+    fixcrossGreen.present(clear=True, update=True)
+    exp.keyboard.wait_char('t')
+
+
+def wait_until(clock, time):
+    # busy loop wait
+    while (clock.time < time):
+        pass
+
+############ MAIN LOOP
+
+control.start(exp)
+
+
+for block in exp.blocks:
+    wait_for_MRI_synchro()
+    clear_screen()
+
+    # present the fixation cross
+    fixcrossGrey.present()    
+
+    clock = expyriment.misc.Clock()
+
+    for itrial, trial in enumerate(block.trials):
+        #print "Trial: #"+itrial
+        for stim in trial.stimuli:
+            stim.preload()
+
+        # present the sentence
+        wait_until(clock, trial.get_factor("sent_onset"))
+        real_sentence_onset_before = clock.time
+        stim.present()        
+        real_sentence_onset_after = clock.time
+
+        io.Keyboard.process_control_keys()
+
+        exp.data.add([trial.get_factor("subj"), trial.get_factor('nbloc'),
+                      trial.get_factor('langue'), trial.get_factor('sent_onset'), 
+                      real_sentence_onset_before,real_sentence_onset_after,trial.get_factor('sent_dur')," ".join(trial_items[itrial])])
+
+control.end()

le_petit_prince/localizer/sound_files/aga.csv

@@ -0,0 +1,74 @@
+0,
+0,aga.csv
+1948,localizer_01A.wav
+2516,localizer_01B.wav
+1640,localizer_01C.wav
+2358,localizer_02A.wav
+3094,localizer_02B.wav
+2139,localizer_02C.wav
+2292,localizer_03A.wav
+3145,localizer_03B.wav
+2227,localizer_03C.wav
+2013,localizer_04A.wav
+2674,localizer_04B.wav
+1696,localizer_04C.wav
+2805,localizer_05A.wav
+2386,localizer_05B.wav
+2400,localizer_05C.wav
+2241,localizer_06A.wav
+2455,localizer_06B.wav
+2521,localizer_06C.wav
+2288,localizer_07A.wav
+2292,localizer_07B.wav
+2115,localizer_07C.wav
+2698,localizer_08A.wav
+3028,localizer_08B.wav
+2311,localizer_08C.wav
+2260,localizer_09A.wav
+2842,localizer_09B.wav
+1519,localizer_09C.wav
+2609,localizer_10A.wav
+2959,localizer_10B.wav
+2288,localizer_10C.wav
+1924,localizer_11A.wav
+2656,localizer_11B.wav
+1924,localizer_11C.wav
+2111,localizer_12A.wav
+1761,localizer_12B.wav
+1701,localizer_12C.wav
+1948,localizer_r_01A.wav
+2516,localizer_r_01B.wav
+1640,localizer_r_01C.wav
+2358,localizer_r_02A.wav
+3094,localizer_r_02B.wav
+2139,localizer_r_02C.wav
+2292,localizer_r_03A.wav
+3145,localizer_r_03B.wav
+2227,localizer_r_03C.wav
+2013,localizer_r_04A.wav
+2674,localizer_r_04B.wav
+1696,localizer_r_04C.wav
+2805,localizer_r_05A.wav
+2386,localizer_r_05B.wav
+2400,localizer_r_05C.wav
+2241,localizer_r_06A.wav
+2455,localizer_r_06B.wav
+2521,localizer_r_06C.wav
+2288,localizer_r_07A.wav
+2292,localizer_r_07B.wav
+2115,localizer_r_07C.wav
+2698,localizer_r_08A.wav
+3028,localizer_r_08B.wav
+2311,localizer_r_08C.wav
+2260,localizer_r_09A.wav
+2842,localizer_r_09B.wav
+1519,localizer_r_09C.wav
+2609,localizer_r_10A.wav
+2959,localizer_r_10B.wav
+2288,localizer_r_10C.wav
+1924,localizer_r_11A.wav
+2656,localizer_r_11B.wav
+1924,localizer_r_11C.wav
+2111,localizer_r_12A.wav
+1761,localizer_r_12B.wav
+1701,localizer_r_12C.wav