🚚 Rename artifact.stage() to artifact.cache() (#36)

laminlabs · Jun 5, 2024 · 411e03e · 411e03e
1 parent 67e7b26
commit 411e03e
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/docs/register_mcmicro_run.py b/docs/register_mcmicro_run.py
@@ -12,7 +12,7 @@
 run = ln.dev.run_context.run
 
 mcmicro_input = ln.Artifact.filter(key__startswith="exemplar-001")
-input_paths = [input_fastq.stage() for input_fastq in mcmicro_input]
+input_paths = [input_fastq.cache() for input_fastq in mcmicro_input]
 
 output = ln.Artifact(
     "exemplar-001/registration/exemplar-001.ome.tif", description="mcmicro"

diff --git a/docs/register_nf_run.py b/docs/register_nf_run.py
@@ -19,7 +19,7 @@
 run = ln.dev.run_context.run
 
 mcmicro_input = ln.Artifact.filter(key__startswith="exemplar-001")
-input_paths = [input_fastq.stage() for input_fastq in mcmicro_input]
+input_paths = [input_fastq.cache() for input_fastq in mcmicro_input]
 
 output = ln.Artifact(
     "exemplar-001/registration/exemplar-001.ome.tif", description="mcmicro"

diff --git a/nextflow_bulk_rna.ipynb b/nextflow_bulk_rna.ipynb
@@ -250,8 +250,8 @@
    },
    "outputs": [],
    "source": [
-    "input_sample_sheet_path = sample_sheet.stage()\n",
-    "input_paths = [input_fastq.stage() for input_fastq in input_fastqs]"
+    "input_sample_sheet_path = sample_sheet.cache()\n",
+    "input_paths = [input_fastq.cache() for input_fastq in input_fastqs]"
    ]
   },
   {