✨ Add post-run scripts note (#28)

* ✨ Add post-run scripts note Signed-off-by: zethson <[email protected]> * 🎨 Address some more feedback Signed-off-by: zethson <[email protected]> --------- Signed-off-by: zethson <[email protected]>
laminlabs · May 1, 2024 · 4510fda · 4510fda
1 parent 11769a5
commit 4510fda
Showing 1 changed file with 7 additions and 19 deletions.
diff --git a/docs/mcmicro_02.ipynb b/docs/mcmicro_02.ipynb
@@ -25,19 +25,11 @@
    "source": [
     "```{note}\n",
     "\n",
-    "This notebook serves as a demo for how to integrate lamindb with Nextflow runs.\n",
-    "Typically, you run the Nextflow workflow from the command line or Nextflow tower and then register input and output data with a script.\n",
+    "Typically, you run the Nextflow workflow from the command line or Seqera Platform and then register input and output data with a script.\n",
+    "The Seqera Platform allows for [post-run scripts](https://docs.seqera.io/platform/23.4.0/launch/advanced#pre-and-post-run-scripts) that can automate this process.\n",
     "```"
    ]
   },
-  {
-   "cell_type": "markdown",
-   "id": "fe9ab200",
-   "metadata": {},
-   "source": [
-    "## Setup"
-   ]
-  },
   {
    "cell_type": "markdown",
    "id": "b7c8e52d",
@@ -104,7 +96,11 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "38e83af2",
-   "metadata": {},
+   "metadata": {
+    "tags": [
+     "hide-output"
+    ]
+   },
    "outputs": [],
    "source": [
     "!python register_mcmicro_run.py"
@@ -185,14 +181,6 @@
    "source": [
     "!lamin delete --force nextflow-mcmicro"
    ]
-  },
-  {
-   "cell_type": "markdown",
-   "id": "ce3e6e84",
-   "metadata": {},
-   "source": [
-    "If you are interested in registering bulk RNA-seq data with Lamin, you can have a look at our [nf-core/rnaseq example](https://github.com/laminlabs/nextflow-lamin-usecases/blob/main/nextflow_bulk_rna.ipynb)."
-   ]
   }
  ],
  "metadata": {