💚 Fix

laminlabs · Aug 16, 2024 · 713f779 · 713f779
1 parent 8ccd80c
commit 713f779
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/docs/mcmicro_exemplar.py b/docs/mcmicro_exemplar.py
@@ -43,7 +43,8 @@
     type="pipeline",
     reference="https://github.com/labsyspharm/mcmicro",
 )
-run = ln.track(transform=transform)
+ln.context.track(transform=transform)
+run = ln.context.run
 # optionally, tag the transform
 ulabel = ln.ULabel(name="nextflow").save()
 run.transform.ulabels.add(ulabel)

diff --git a/docs/register_nf_run.py b/docs/register_nf_run.py
@@ -15,8 +15,8 @@
     type="pipeline",
     reference=args.pipeline_reference,
 )
-ln.track(transform=transform)
-run = ln.dev.run_context.run
+ln.context.track(transform=transform)
+run = ln.context.run
 
 mcmicro_input = ln.Artifact.filter(key__startswith="exemplar-001")
 input_paths = [input_fastq.cache() for input_fastq in mcmicro_input]