Releases: lifebit-ai/exomiser-pipeline-nf
Releases · lifebit-ai/exomiser-pipeline-nf
v2.0.0
Release v2.0.0 (#8) * first commit * dummy ex process * row split * row split * sed g fix * hpo list * vcf path rm ln * proband placeholder * proband placeholder * update exomiser|PED|parser_py * remove dsl1 param * readlink PED file * sed colon * sed colon fix * ped input by cat * file ped no proband * Ped_parser container added * dockerhub test * fix ped cmd bash error * fix ped cmd bash error * add quay image * collect input * mistaken deletion fix * add maxforks * ls it * wildcard input collect * rm collect * split channels * remove exomiser data * add exomiser dat * add exomiser dat * final * final2 * gunzip basename * gunzip basename * HPO fix again * proband id channel * fix if ch * add index * add retry * copy file * copy file * gunzip file * tuple input output * debug local * fork1 * rm ln hash * fork 5 delay submit * uncomment out exomiser commands - fork =1 * add container options * change rate * remove nans from ped * rate limit 5m * retries * rm symbolic link * force symbolic link * size vcf symbolic * stat symbolic link * join channels * realign params * ln svf * update yaml conf * Update main.nf * batch run fix Removes the error `ln: failed to create symbolic link '/data/exomiser-data-bundle': No such file or directory` when run with batch * added the ped_module script in the bin and removed the hardcoded path * added testing_family_file * changed paths in the family file * changed the sep of the family file * removed family file as it is in S3 * fixed pipeline bugs in testing * fixed bugs in testing * added documentation for the pipeline * fixed url in documentation for the pipeline * added default paths to files in S3 bucket * fixed typo * changed the docker for bug on platform * changed bundle data path * commented debug code * removed_js_files * change name of the profiles * fixed typo in documentation * changed channel names * outputs MultiQC html into outdir * removing directive from process and adding them to the config file * added usage command line with params and defaults * parametrized resources * fix typo * fix typo * fix typo * fix typo * fix typo * moved submitRateLimit back to the process * added testing profile for multi_hpo * fixed README * fix typo --------- Co-authored-by: Ryan Cardenas <[email protected]> Co-authored-by: Ryan Cardenas <[email protected]> Co-authored-by: Ryan Cardenas <[email protected]> Co-authored-by: Leila Mansouri <[email protected]> Co-authored-by: Leila Mansouri <[email protected]>