Meet template convention #38
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| name: CI test | |
| # This workflow is triggered on pushes and PRs to the repository. | |
| on: | |
| pull_request: | |
| types: [review_requested, ready_for_review] | |
| branches: | |
| - main | |
| - dev | |
| - adds-profiles | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| nxf_ver: ['21.04.1', '22.10.4'] | |
| vcf_tools: ['test_mix_tools_vcf', 'test_strelka_vcf', 'test_manta_vcf'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install Nextflow | |
| run: | | |
| export NXF_VER=${{ matrix.nxf_ver }} | |
| wget -qO- get.nextflow.io | bash | |
| sudo mv nextflow /usr/local/bin/ | |
| - name: Basic workflow tests | |
| run: | | |
| nextflow run ${GITHUB_WORKSPACE} --config conf/${{ matrix.vcf_tools }}.config |