Meet template convention #6
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| name: CloudOS CI test | |
| # This workflow is triggered on PRs of type review_requested or ready_for_review, against dev or main | |
| on: | |
| pull_request: | |
| types: [ ready_for_review ] | |
| branches: | |
| - main | |
| - dev | |
| - adds-profiles | |
| workflow_dispatch: | |
| jobs: | |
| mutational-signature-nf: | |
| runs-on: ubuntu-20.04 | |
| if: github.event.pull_request.draft == false | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Submit mutational-signature-nf job to CloudOS using cloudos-cli | |
| id: mutational-signature-nf | |
| uses: lifebit-ai/[email protected] | |
| with: | |
| apikey: ${{ secrets.CLOUDOS_TOKEN }} | |
| cloudos_url: 'https://stg.sdlc.lifebit.ai' | |
| workspace_id: ${{ secrets.CLOUDOS_WORKSPACE_ID }} | |
| project_name: 'ci-testing' | |
| workflow_name: 'mutational-signature-nf' | |
| nextflow_profile: 'test' | |
| git_commit: '${{ github.event.pull_request.head.sha }}' | |
| job_name: 'test_${{ github.event.pull_request.head.sha }}' | |
| instance_type: 't3.small' | |
| instance_disk: '40' | |
| cost_limit: ${{ secrets.GLOBAL_CLOUDOS_JOB_COST_LIMIT }} | |
| cloudos_cli_flags: '--wait-completion --batch' |