Merge pull request #3241 from jessica-mitchell/add-tags

Update models with adaptation mechanisms and change tag 'adaptive threshold' to 'adaptation'
nest · Jul 31, 2024 · 468edda · 468edda
2 parents 21000ef + 386b1de
commit 468edda
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Showing 23 changed files with 25 additions and 25 deletions.
diff --git a/models/aeif_cond_alpha.h b/models/aeif_cond_alpha.h
@@ -68,7 +68,7 @@ extern "C" int aeif_cond_alpha_dynamics( double, const double*, double*, void* )
  */
 extern "C" int aeif_cond_alpha_dynamics_DT0( double, const double*, double*, void* );
 
-/* BeginUserDocs: neuron, integrate-and-fire, adaptive threshold, conductance-based
+/* BeginUserDocs: neuron, integrate-and-fire, adaptation, conductance-based
 
 Short description
 +++++++++++++++++

diff --git a/models/aeif_cond_alpha_astro.h b/models/aeif_cond_alpha_astro.h
@@ -68,7 +68,7 @@ extern "C" int aeif_cond_alpha_astro_dynamics( double, const double*, double*, v
  */
 extern "C" int aeif_cond_alpha_astro_dynamics_DT0( double, const double*, double*, void* );
 
-/* BeginUserDocs: neuron, integrate-and-fire, adaptive threshold, conductance-based, astrocyte
+/* BeginUserDocs: neuron, integrate-and-fire, adaptation, conductance-based, astrocyte
 
 Short description
 +++++++++++++++++

diff --git a/models/aeif_cond_alpha_multisynapse.h b/models/aeif_cond_alpha_multisynapse.h
@@ -42,7 +42,7 @@
 #include "ring_buffer.h"
 #include "universal_data_logger.h"
 
-/* BeginUserDocs: neuron, integrate-and-fire, adaptive threshold, conductance-based
+/* BeginUserDocs: neuron, integrate-and-fire, adaptation, conductance-based
 
 Short description
 +++++++++++++++++

diff --git a/models/aeif_cond_beta_multisynapse.h b/models/aeif_cond_beta_multisynapse.h
@@ -56,7 +56,7 @@ namespace nest
  */
 extern "C" int aeif_cond_beta_multisynapse_dynamics( double, const double*, double*, void* );
 
-/* BeginUserDocs: neuron, adaptive threshold, integrate-and-fire, conductance-based
+/* BeginUserDocs: neuron, adaptation, integrate-and-fire, conductance-based
 
 Short description
 +++++++++++++++++

diff --git a/models/aeif_cond_exp.h b/models/aeif_cond_exp.h
@@ -68,7 +68,7 @@ extern "C" int aeif_cond_exp_dynamics( double, const double*, double*, void* );
  */
 extern "C" int aeif_cond_exp_dynamics_DT0( double, const double*, double*, void* );
 
-/* BeginUserDocs: neuron, adaptive threshold, integrate-and-fire, conductance-based
+/* BeginUserDocs: neuron, adaptation, integrate-and-fire, conductance-based
 
 Short description
 +++++++++++++++++

diff --git a/models/aeif_psc_alpha.h b/models/aeif_psc_alpha.h
@@ -57,7 +57,7 @@ namespace nest
  */
 extern "C" int aeif_psc_alpha_dynamics( double, const double*, double*, void* );
 
-/* BeginUserDocs: neuron, adaptive threshold, integrate-and-fire, current-based
+/* BeginUserDocs: neuron, adaptation, integrate-and-fire, current-based
 
 Short description
 +++++++++++++++++

diff --git a/models/aeif_psc_delta.h b/models/aeif_psc_delta.h
@@ -57,7 +57,7 @@ namespace nest
  */
 extern "C" int aeif_psc_delta_dynamics( double, const double*, double*, void* );
 
-/* BeginUserDocs: neuron, adaptive threshold, integrate-and-fire, current-based
+/* BeginUserDocs: neuron, adaptation, integrate-and-fire, current-based
 
 Short description
 +++++++++++++++++

diff --git a/models/aeif_psc_delta_clopath.h b/models/aeif_psc_delta_clopath.h
@@ -58,7 +58,7 @@ namespace nest
  */
 extern "C" int aeif_psc_delta_clopath_dynamics( double, const double*, double*, void* );
 
-/* BeginUserDocs: neuron, adaptive threshold, integrate-and-fire, Clopath plasticity, current-based
+/* BeginUserDocs: neuron, adaptation, integrate-and-fire, Clopath plasticity, current-based
 
 Short description
 +++++++++++++++++

diff --git a/models/aeif_psc_exp.h b/models/aeif_psc_exp.h
@@ -57,7 +57,7 @@ namespace nest
  */
 extern "C" int aeif_psc_exp_dynamics( double, const double*, double*, void* );
 
-/* BeginUserDocs: neuron, integrate-and-fire, adaptive threshold, current-based
+/* BeginUserDocs: neuron, integrate-and-fire, adaptation, current-based
 
 Short description
 +++++++++++++++++

diff --git a/models/amat2_psc_exp.h b/models/amat2_psc_exp.h
@@ -36,7 +36,7 @@
 namespace nest
 {
 
-/* BeginUserDocs: neuron, integrate-and-fire, current-based
+/* BeginUserDocs: neuron, integrate-and-fire, current-based, adaptation
 
 Short description
 +++++++++++++++++

diff --git a/models/eprop_iaf_adapt_bsshslm_2020.h b/models/eprop_iaf_adapt_bsshslm_2020.h
@@ -35,7 +35,7 @@
 namespace nest
 {
 
-/* BeginUserDocs: neuron, e-prop plasticity, current-based, integrate-and-fire, adaptive threshold
+/* BeginUserDocs: neuron, e-prop plasticity, current-based, integrate-and-fire, adaptation
 
 Short description
 +++++++++++++++++

diff --git a/models/gif_cond_exp.h b/models/gif_cond_exp.h
@@ -48,7 +48,7 @@ namespace nest
 
 extern "C" int gif_cond_exp_dynamics( double, const double*, double*, void* );
 
-/* BeginUserDocs: neuron, integrate-and-fire, conductance-based
+/* BeginUserDocs: neuron, integrate-and-fire, conductance-based, adaptation
 
 Short description
 +++++++++++++++++

diff --git a/models/gif_cond_exp_multisynapse.h b/models/gif_cond_exp_multisynapse.h
@@ -46,7 +46,7 @@ namespace nest
 
 extern "C" int gif_cond_exp_multisynapse_dynamics( double, const double*, double*, void* );
 
-/* BeginUserDocs: neuron, integrate-and-fire, conductance-based
+/* BeginUserDocs: neuron, integrate-and-fire, conductance-based, adaptation
 
 Short description
 +++++++++++++++++

diff --git a/models/gif_pop_psc_exp.h b/models/gif_pop_psc_exp.h
@@ -38,7 +38,7 @@ namespace nest
 
 class Network;
 
-/* BeginUserDocs: neuron, integrate-and-fire, current-based
+/* BeginUserDocs: neuron, integrate-and-fire, current-based, adaptation
 
 Short description
 +++++++++++++++++

diff --git a/models/gif_psc_exp.h b/models/gif_psc_exp.h
@@ -35,7 +35,7 @@
 namespace nest
 {
 
-/* BeginUserDocs: neuron, integrate-and-fire, current-based
+/* BeginUserDocs: neuron, integrate-and-fire, current-based, adaptation
 
 Short description
 +++++++++++++++++

diff --git a/models/gif_psc_exp_multisynapse.h b/models/gif_psc_exp_multisynapse.h
@@ -35,7 +35,7 @@
 namespace nest
 {
 
-/* BeginUserDocs: neuron, integrate-and-fire, current-based
+/* BeginUserDocs: neuron, integrate-and-fire, current-based, adaptation
 
 Short description
 +++++++++++++++++

diff --git a/models/glif_cond.h b/models/glif_cond.h
@@ -42,7 +42,7 @@
 
 #include "dictdatum.h"
 
-/* BeginUserDocs:  neuron, integrate-and-fire, conductance-based
+/* BeginUserDocs:  neuron, integrate-and-fire, conductance-based, adaptation
 
 Short description
 +++++++++++++++++

diff --git a/models/glif_psc.h b/models/glif_psc.h
@@ -32,7 +32,7 @@
 
 #include "dictdatum.h"
 
-/* BeginUserDocs: neuron, integrate-and-fire, current-based
+/* BeginUserDocs: neuron, integrate-and-fire, current-based, adaptation
 
 Short description
 +++++++++++++++++

diff --git a/models/glif_psc_double_alpha.h b/models/glif_psc_double_alpha.h
@@ -32,7 +32,7 @@
 
 #include "dictdatum.h"
 
-/* BeginUserDocs: neuron, integrate-and-fire, current-based
+/* BeginUserDocs: neuron, integrate-and-fire, current-based, adaptation
 
 Short description
 +++++++++++++++++

diff --git a/models/ht_neuron.h b/models/ht_neuron.h
@@ -63,7 +63,7 @@ namespace nest
  */
 extern "C" int ht_neuron_dynamics( double, const double*, double*, void* );
 
-/* BeginUserDocs: neuron, Hill-Tononi plasticity
+/* BeginUserDocs: neuron, Hill-Tononi plasticity, adaptation, integrate-and-fire
 
 Short description
 +++++++++++++++++
@@ -76,7 +76,7 @@ Description
 This model neuron implements a slightly modified version of the
 neuron model described in [1]_. The most important properties are:
 
-- Integrate-and-fire with threshold adaptive threshold.
+- Integrate-and-fire with adaptive threshold.
 - Repolarizing potassium current instead of hard reset.
 - AMPA, NMDA, GABA_A, and GABA_B conductance-based synapses with
   beta-function (difference of exponentials) time course.

diff --git a/models/izhikevich.h b/models/izhikevich.h
@@ -34,7 +34,7 @@
 namespace nest
 {
 
-/* BeginUserDocs: neuron, integrate-and-fire
+/* BeginUserDocs: neuron, integrate-and-fire, adaptation
 
 Short description
 +++++++++++++++++
@@ -49,7 +49,7 @@ Implementation of the simple spiking neuron model introduced by Izhikevich
 
 .. math::
    &dV_m/dt = 0.04 {V_m}^2 + 5 V_m + 140 - U_m + I \\
-   &du/dt = a (b V_m - U_m) \\
+   &dU_m/dt = a (b V_m - U_m) \\
 
 .. math::
 

diff --git a/models/mat2_psc_exp.h b/models/mat2_psc_exp.h
@@ -36,7 +36,7 @@
 namespace nest
 {
 
-/* BeginUserDocs: neuron, integrate-and-fire, current-based
+/* BeginUserDocs: neuron, integrate-and-fire, current-based, adaptation
 
 Short description
 +++++++++++++++++

diff --git a/models/pp_psc_delta.h b/models/pp_psc_delta.h
@@ -35,7 +35,7 @@
 namespace nest
 {
 
-/* BeginUserDocs: neuron, point process, current-based
+/* BeginUserDocs: neuron, point process, current-based, adaptation
 
 Short description
 +++++++++++++++++