Merge pull request #1494 from maxulysse/sort_gcp

Fix: Cloud Storage objects are immutable on GCP
nf-core · May 3, 2024 · 67914f8 · 67914f8
2 parents 1eae2e3 + 5ab5292
commit 67914f8
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -24,6 +24,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - [#1378](https://github.com/nf-core/sarek/pull/1378) - Improve cloud tests launch workflow to use matrix
 - [#1488](https://github.com/nf-core/sarek/pull/1488) - Fixing call to `GATK4_HAPLOTYPECALLER` and thereby also the test-profile `test_full_germline`
+- [#1494](https://github.com/nf-core/sarek/pull/1494) - Fix Cloud Storage objects are immutable on GCP [#1491](https://github.com/nf-core/sarek/issues/1491)
 - [#1496](https://github.com/nf-core/sarek/pull/1496) - Fix multiple DOI handling in manifest
 
 ### Removed

diff --git a/workflows/sarek/main.nf b/workflows/sarek/main.nf
@@ -879,7 +879,7 @@ workflow SAREK {
         ch_multiqc_files                      = ch_multiqc_files.mix(ch_workflow_summary.collectFile(name: 'workflow_summary_mqc.yaml'))
         ch_multiqc_files                      = ch_multiqc_files.mix(version_yaml)
         ch_multiqc_files                      = ch_multiqc_files.mix(reports)
-        ch_multiqc_files                      = ch_multiqc_files.mix(ch_methods_description.collectFile(name: 'methods_description_mqc.yaml', sort: false))
+        ch_multiqc_files                      = ch_multiqc_files.mix(ch_methods_description.collectFile(name: 'methods_description_mqc.yaml', sort: true))
 
         MULTIQC (
             ch_multiqc_files.collect(),