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39k Pfizer dataset (#188) #189

Merged
merged 3 commits into from
Jul 12, 2024
Merged

39k Pfizer dataset (#188) #189

merged 3 commits into from
Jul 12, 2024

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bdeadman
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39k reaction dataset from https://doi.org/10.1038/s41557-023-01393-w. This is a Pfizer dataset which was previously proprietary but was published earlier in 2024. This dataset includes additional labelling of solvents and reagents which was not provided in the Nature paper.

Original dataset preparation by @emmaking-smith. @bdeadman has extracted names from solvents, reagent1 and reagent2 fields, and where possible has split mixtures into their components, and added smiles strings.
data and generator notebook.zip

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Change summary:

Filename Added Removed Changed
data/complete_dataset.pbtxt.gz 0 0 0
0 0 0

@bdeadman
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@skearnes @connorcoley @qai222
The Pfizer 39k dataset is ready for review.

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All reactions pass validations and spot checks show no obvious problems.

@skearnes skearnes closed this Jul 12, 2024
@skearnes skearnes reopened this Jul 12, 2024
@skearnes skearnes closed this Jul 12, 2024
@skearnes skearnes reopened this Jul 12, 2024
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Thanks @bdeadman!

@skearnes skearnes enabled auto-merge (squash) July 12, 2024 01:00
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Change summary:

Filename Added Removed Changed
data/d9/ord_dataset-d92976309c3a48a3a64a4cf5e7048086.pb.gz 39347 0 0
39347 0 0

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Change summary:

Filename Added Removed Changed
data/d9/ord_dataset-d92976309c3a48a3a64a4cf5e7048086.pb.gz 39347 0 0
39347 0 0

@skearnes skearnes merged commit ce19dc9 into main Jul 12, 2024
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@skearnes skearnes deleted the bjd-addition-1 branch July 12, 2024 01:04
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@bdeadman I just realized that the dataset name and description are empty; can you submit a PR to update them?

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3 participants