Merge pull request #1036 from pybamm-team/develop

v0.2.2 into master

.flake8

@@ -12,7 +12,7 @@ exclude=
     share,
     pyvenv.cfg,
     third-party,
-    sundials-5.0.0,
+    KLU_module_deps,
 ignore=
     # False positive for white space before ':' on list slice
     # black should format these correctly

.github/workflows/test_on_push.yml

@@ -0,0 +1,106 @@
+name: PyBaMM
+
+on:
+  push:
+
+  pull_request:
+
+  # everyday at 3 am UTC
+  schedule:
+    - cron:  '0 3 * * *'
+
+jobs:
+
+  style:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v2
+    - name: Check style
+      uses: actions/setup-python@v1
+      with:
+        python-version: 3.7
+
+    - name: Install package
+      run: |
+        python -m pip install --upgrade pip wheel setuptools
+        pip install -e .[dev]
+
+    - name: Check style
+      run: python -m flake8
+
+  build:
+    needs: style
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: [3.6, 3.7]
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install Linux system dependencies
+      if: matrix.os == 'ubuntu-latest'
+      run: |
+        sudo apt install gfortran gcc libopenblas-dev liblapack-dev graphviz
+        sudo apt install python${{ matrix.python-version }}.dev
+    
+    - name: Install MacOS system dependencies
+      if: matrix.os == 'macos-latest'
+      run: |
+        brew update
+        brew install graphviz
+        brew install openblas
+        
+    - name: Install Windows system dependencies
+      if: matrix.os == 'windows-latest'
+      run: choco install graphviz
+
+    - name: Install standard python dependencies
+      run: |
+        python -m pip install --upgrade pip wheel setuptools
+        pip install -e .
+
+    - name: Install SUNDIALS and SuiteSparse
+      if: matrix.os != 'windows-latest'
+      run: |
+        pip install wget
+        git clone https://github.com/pybind/pybind11.git
+        python scripts/setup_KLU_module_build.py
+        export SUNDIALS_INST=$HOME/.local
+        pip install scikits.odes
+        pip install -e .
+
+    - name: Run unit tests Windows
+      if: matrix.os == 'windows-latest'
+      run: |
+        python run-tests.py --unit --folder all
+
+    - name: Run unit tests
+      if: matrix.os != 'windows-latest'
+      run: |
+        export LD_LIBRARY_PATH=$HOME/.local/lib:scikits.odes/sundials5/lib:$LD_LIBRARY_PATH
+        python run-tests.py --unit --folder all
+
+    - name: Install docs dependencies and run doctests
+      if: matrix.os != 'windows-latest'
+      run: |
+        export LD_LIBRARY_PATH=$HOME/.local/lib:scikits.odes/sundials5/lib:$LD_LIBRARY_PATH
+        pip install -e .[docs]
+        python run-tests.py --doctest
+    
+    - name: Install dev dependencies and run example tests
+      if: matrix.os != 'windows-latest'
+      run: |
+        export LD_LIBRARY_PATH=$HOME/.local/lib:scikits.odes/sundials5/lib:$LD_LIBRARY_PATH
+        pip install -e .[dev]
+        python run-tests.py --examples
+        
+    - name: Instal and run coverage
+      if: success() && (matrix.os == 'unbuntu-latest' && matrix.python-version == 3.7)
+      uses: codecov/codecov-action@v1

.gitignore

@@ -96,3 +96,6 @@ cmake_install.cmake
 
 
 third-party/pybind11
+
+# Build dependencies/
+KLU_module_deps