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Release 1.1.2 #107

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wants to merge 148 commits into from
Closed

Release 1.1.2 #107

wants to merge 148 commits into from

Commits on Jan 13, 2023

  1. bump version for develop branch

    @samuel-marsh
    samuel-marsh committed Jan 13, 2023
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Commits on Feb 9, 2023

  1. add aspect ratio param

    @samuel-marsh
    samuel-marsh committed Feb 9, 2023
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  2. aspect ration to function params

    @samuel-marsh
    samuel-marsh committed Feb 9, 2023
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  3. add aspect ratio to more plots

    @samuel-marsh
    samuel-marsh committed Feb 9, 2023
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  4. add to function params

    @samuel-marsh
    samuel-marsh committed Feb 9, 2023
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  5. add param description

    @samuel-marsh
    samuel-marsh committed Feb 9, 2023
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  6. aspect ratio to nebulosa plotting

    @samuel-marsh
    samuel-marsh committed Feb 9, 2023
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  7. aspect ratio liger dimplot

    @samuel-marsh
    samuel-marsh committed Feb 9, 2023
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  8. update changelog

    @samuel-marsh
    samuel-marsh committed Feb 9, 2023
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  9. update docs

    @samuel-marsh
    samuel-marsh committed Feb 9, 2023
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  10. bump version and date

    @samuel-marsh
    samuel-marsh committed Feb 9, 2023
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Commits on Feb 14, 2023

  1. fix qc plot feature

    @samuel-marsh
    samuel-marsh committed Feb 14, 2023
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  2. update changelog

    @samuel-marsh
    samuel-marsh committed Feb 14, 2023
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  3. bump version and date

    @samuel-marsh
    samuel-marsh committed Feb 14, 2023
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  4. fix

    @samuel-marsh
    samuel-marsh committed Feb 14, 2023
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  5. bump version and date

    @samuel-marsh
    samuel-marsh committed Feb 14, 2023
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Commits on Feb 24, 2023

  1. add median plotting

    @samuel-marsh
    samuel-marsh committed Feb 24, 2023
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  2. update docs

    @samuel-marsh
    samuel-marsh committed Feb 24, 2023
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  3. update changelog

    @samuel-marsh
    samuel-marsh committed Feb 24, 2023
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  4. bump version and date

    @samuel-marsh
    samuel-marsh committed Feb 24, 2023
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Commits on Mar 20, 2023

  1. add split collect guides

    @samuel-marsh
    samuel-marsh committed Mar 20, 2023
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  2. update docs

    @samuel-marsh
    samuel-marsh committed Mar 20, 2023
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  3. bump version and date

    @samuel-marsh
    samuel-marsh committed Mar 20, 2023
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  4. add split_collect checks for feature length

    @samuel-marsh
    samuel-marsh committed Mar 20, 2023
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  5. update docs

    @samuel-marsh
    samuel-marsh committed Mar 20, 2023
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  6. update changelog

    @samuel-marsh
    samuel-marsh committed Mar 20, 2023
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  7. bump version

    @samuel-marsh
    samuel-marsh committed Mar 20, 2023
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  8. update changelog

    @samuel-marsh
    samuel-marsh committed Mar 20, 2023
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Commits on Mar 24, 2023

  1. add legend and column size modifications

    @samuel-marsh
    samuel-marsh committed Mar 24, 2023
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  2. update docs

    @samuel-marsh
    samuel-marsh committed Mar 24, 2023
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  3. update parameters

    @samuel-marsh
    samuel-marsh committed Mar 24, 2023
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  4. update docs

    @samuel-marsh
    samuel-marsh committed Mar 24, 2023
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  5. update changelog

    @samuel-marsh
    samuel-marsh committed Mar 24, 2023
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  6. bump version and date

    @samuel-marsh
    samuel-marsh committed Mar 24, 2023
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Commits on May 10, 2023

  1. extract modality function

    @samuel-marsh
    samuel-marsh committed May 10, 2023
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  2. add multimodal merge

    @samuel-marsh
    samuel-marsh committed May 10, 2023
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  3. remove testing code

    @samuel-marsh
    samuel-marsh committed May 10, 2023
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  4. Update Docs

    @samuel-marsh
    samuel-marsh committed May 10, 2023
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  5. update changelog

    @samuel-marsh
    samuel-marsh committed May 10, 2023
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  6. bump version and date

    @samuel-marsh
    samuel-marsh committed May 10, 2023
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Commits on May 16, 2023

  1. update cellbender read compatibility

    @samuel-marsh
    samuel-marsh committed May 16, 2023
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  2. fix the feature_slot_name check

    @samuel-marsh
    samuel-marsh committed May 16, 2023
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  3. remove test code

    @samuel-marsh
    samuel-marsh committed May 16, 2023
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  4. Update docs

    @samuel-marsh
    samuel-marsh committed May 16, 2023
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  5. specify optional params

    @samuel-marsh
    samuel-marsh committed May 16, 2023
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  6. update changelog

    @samuel-marsh
    samuel-marsh committed May 16, 2023
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  7. update changelog

    @samuel-marsh
    samuel-marsh committed May 16, 2023
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  8. bump version and date

    @samuel-marsh
    samuel-marsh committed May 16, 2023
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  9. Update CellBender Vignette

    @samuel-marsh
    samuel-marsh committed May 16, 2023
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  10. bump version

    @samuel-marsh
    samuel-marsh committed May 16, 2023
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Commits on May 18, 2023

  1. change feature fontface

    @samuel-marsh
    samuel-marsh committed May 18, 2023
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  2. update docs

    @samuel-marsh
    samuel-marsh committed May 18, 2023
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  3. update docs

    @samuel-marsh
    samuel-marsh committed May 18, 2023
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  4. update changelog

    @samuel-marsh
    samuel-marsh committed May 18, 2023
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  5. bump version and date

    @samuel-marsh
    samuel-marsh committed May 18, 2023
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  6. add link

    @samuel-marsh
    samuel-marsh committed May 18, 2023
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Commits on Jun 1, 2023

  1. add reduction loading check

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  2. Update docs

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  3. rename parameter to harmonize across other utilities

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  4. fix return

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  5. fix parameter rename

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  6. change defaults to keep current behavior

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  7. update changelog

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  8. bump version and date

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  9. fix for featureplot DR loadings

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  10. update changelog

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  11. bump version

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  12. update docs

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  13. update manual doc

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  14. bump version

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  15. fix error reduction loading

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  16. bump version

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  17. fix .data[[var]] deprecation ClusteredDotPlot

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  18. bump version

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  19. add ability to turn clustering on or off ClusteredDotPlot

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  20. update docs

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  21. bump version

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    samuel-marsh committed Jun 1, 2023
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  22. update changelog

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  23. typo

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  24. bump version

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  25. fix missing manual entries

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  26. fix parameter name change

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  27. bump version

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  28. update cran comments

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  29. update docs

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  30. bump version for release compatibility

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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  31. fix version

    @samuel-marsh
    samuel-marsh committed Jun 1, 2023
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Commits on Jun 2, 2023

  1. change hasArg to string

    @samuel-marsh
    samuel-marsh committed Jun 2, 2023
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  2. style fixes

    @samuel-marsh
    samuel-marsh committed Jun 2, 2023
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Commits on Jun 3, 2023

  1. style updates

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    samuel-marsh committed Jun 3, 2023
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Commits on Jun 5, 2023

  1. any_of replacement

    @samuel-marsh
    samuel-marsh committed Jun 5, 2023
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  2. import fix

    @samuel-marsh
    samuel-marsh committed Jun 5, 2023
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  3. style fixes

    @samuel-marsh
    samuel-marsh committed Jun 5, 2023
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Commits on Jun 6, 2023

  1. remove select_at

    @samuel-marsh
    samuel-marsh committed Jun 6, 2023
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  2. remove summarise_at

    @samuel-marsh
    samuel-marsh committed Jun 6, 2023
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  3. update docs

    @samuel-marsh
    samuel-marsh committed Jun 6, 2023
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  4. style fix

    @samuel-marsh
    samuel-marsh committed Jun 6, 2023
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  5. style fix

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    samuel-marsh committed Jun 6, 2023
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  6. fix imports and style fixes

    @samuel-marsh
    samuel-marsh committed Jun 6, 2023
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  7. style fixes

    @samuel-marsh
    samuel-marsh committed Jun 6, 2023
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  8. style fixes

    @samuel-marsh
    samuel-marsh committed Jun 6, 2023
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  9. style fixes

    @samuel-marsh
    samuel-marsh committed Jun 6, 2023
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  10. update changelog

    @samuel-marsh
    samuel-marsh committed Jun 6, 2023
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  11. bump date

    @samuel-marsh
    samuel-marsh committed Jun 6, 2023
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Commits on Jun 12, 2023

  1. multi compatibility

    @samuel-marsh
    samuel-marsh committed Jun 12, 2023
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  2. update docs

    @samuel-marsh
    samuel-marsh committed Jun 12, 2023
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  3. update changelog

    @samuel-marsh
    samuel-marsh committed Jun 12, 2023
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  4. bump date

    @samuel-marsh
    samuel-marsh committed Jun 12, 2023
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  5. update h5 multidirectory

    @samuel-marsh
    samuel-marsh committed Jun 12, 2023
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  6. update docs

    @samuel-marsh
    samuel-marsh committed Jun 12, 2023
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Commits on Jun 15, 2023

  1. style fixes

    @samuel-marsh
    samuel-marsh committed Jun 15, 2023
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  2. wrap no legend inside iterative dimplot by sample

    @samuel-marsh
    samuel-marsh committed Jun 15, 2023
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  3. update param

    @samuel-marsh
    samuel-marsh committed Jun 15, 2023
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  4. update docs

    @samuel-marsh
    samuel-marsh committed Jun 15, 2023
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  5. .data fix

    @samuel-marsh
    samuel-marsh committed Jun 15, 2023
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Commits on Jun 16, 2023

  1. add dot_size parameter

    @samuel-marsh
    samuel-marsh committed Jun 16, 2023
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  2. Update docs

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    samuel-marsh committed Jun 16, 2023
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  3. iterate cluster highlight rewrite

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    samuel-marsh committed Jun 16, 2023
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  4. remove test code

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    samuel-marsh committed Jun 16, 2023
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  5. update docs

    @samuel-marsh
    samuel-marsh committed Jun 16, 2023
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  6. fix rename .data superceded

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    samuel-marsh committed Jun 16, 2023
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  7. style fix and remove test code

    @samuel-marsh
    samuel-marsh committed Jun 16, 2023
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  8. update changelog

    @samuel-marsh
    samuel-marsh committed Jun 16, 2023
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  9. bump date

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    samuel-marsh committed Jun 16, 2023
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Commits on Jun 23, 2023

  1. switch import

    @samuel-marsh
    samuel-marsh committed Jun 23, 2023
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  2. meta highlight plot to use under the hood rewrite

    @samuel-marsh
    samuel-marsh committed Jun 23, 2023
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  3. update docs remove pbmapply. no longer needed

    @samuel-marsh
    samuel-marsh committed Jun 23, 2023
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  4. add no_legend option

    @samuel-marsh
    samuel-marsh committed Jun 23, 2023
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  5. update docs

    @samuel-marsh
    samuel-marsh committed Jun 23, 2023
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  6. update manual entry

    @samuel-marsh
    samuel-marsh committed Jun 23, 2023
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  7. Update docs

    @samuel-marsh
    samuel-marsh committed Jun 23, 2023
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  8. bump date

    @samuel-marsh
    samuel-marsh committed Jun 23, 2023
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  9. update changelog

    @samuel-marsh
    samuel-marsh committed Jun 23, 2023
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  10. style

    @samuel-marsh
    samuel-marsh committed Jun 23, 2023
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  11. Update changelog

    @samuel-marsh
    samuel-marsh committed Jun 23, 2023
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Commits on Jul 10, 2023

  1. fix typo

    @samuel-marsh
    samuel-marsh committed Jul 10, 2023
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  2. add check if no reduction present

    @samuel-marsh
    samuel-marsh committed Jul 10, 2023
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  3. add multimodal merge to vignette

    @samuel-marsh
    samuel-marsh committed Jul 10, 2023
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  4. Update median plotting QC

    @samuel-marsh
    samuel-marsh committed Jul 10, 2023
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  5. add median example qc plots

    @samuel-marsh
    samuel-marsh committed Jul 10, 2023
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  6. typo fix

    @samuel-marsh
    samuel-marsh committed Jul 10, 2023
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  7. update changelog

    @samuel-marsh
    samuel-marsh committed Jul 10, 2023
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  8. add dates and release version to changelog

    @samuel-marsh
    samuel-marsh committed Jul 10, 2023
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  9. bump date

    @samuel-marsh
    samuel-marsh committed Jul 10, 2023
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  10. fix error

    @samuel-marsh
    samuel-marsh committed Jul 10, 2023
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  11. new fix read order

    @samuel-marsh
    samuel-marsh committed Jul 10, 2023
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  12. remove old cellbender error check

    @samuel-marsh
    samuel-marsh committed Jul 10, 2023
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Commits on Jul 12, 2023

  1. fix typo

    @samuel-marsh
    samuel-marsh committed Jul 12, 2023
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