Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

snakemake dependency 'datrie' requires fragile C extention compiles on modern python #3105

Open
samimia-swks opened this issue Sep 25, 2024 · 1 comment
Labels
bug Something isn't working

Comments

@samimia-swks
Copy link

samimia-swks commented Sep 25, 2024

The dependency datrie seems to have not been maintained since 2020 and is missing wheels for python 3.9+. Therefore, in most cases a pip / uv / etc install of snakemake requires a compile of datrie's C extensions from source. This is generally a fragile process, e.g. astral-sh/uv#7525 pytries/datrie#101

Requiring an unmaintained dependency with C extensions seems like a bad idea...

@samimia-swks samimia-swks added the bug Something isn't working label Sep 25, 2024
@vandalt
Copy link
Contributor

vandalt commented Sep 27, 2024

I think this is a duplicate of #2970 (or at least has some overlap with it)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

No branches or pull requests

2 participants