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1,035 Open 684 Closed
1,035 Open 684 Closed
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Issues list

mamba 2.0.0 doesn't support the --no-default-packages option bug Something isn't working
#3108 opened Sep 30, 2024 by edbennett
1
Be able to depend on individual dataset(s) within an HDF5 file enhancement New feature or request
#3106 opened Sep 26, 2024 by edbennett
snakemake dependency 'datrie' requires fragile C extention compiles on modern python bug Something isn't working
#3105 opened Sep 25, 2024 by samimia-swks
1
Enhance Report Plugin Flexibility: Template Language Support, File Rendering Options, and Report Structure Customization enhancement New feature or request
#3102 opened Sep 25, 2024 by MatthiasLienhard
Restoring cached folders results in a clock skew error bug Something isn't working
#3097 opened Sep 20, 2024 by karl-az
Rerun triggers not causing dependent steps to be rerun bug Something isn't working
#3095 opened Sep 19, 2024 by powelleric
4
snakemake slurm seem to limit number of threads bug Something isn't working
#3092 opened Sep 19, 2024 by benjamin-lieser
6
Conda + container fails to forward apptainer-args bug Something isn't working
#3088 opened Sep 17, 2024 by karl-az
Snakemake output prints sensitive information with storage plugin bug Something isn't working
#3087 opened Sep 14, 2024 by MattMonk
1
Visually group modules into single rules via --modulegraph enhancement New feature or request
#3086 opened Sep 11, 2024 by irm-codebase
1
Report rendering of rule fails if conda environment contains pip dependency bug Something isn't working
#3084 opened Sep 11, 2024 by votti
unintuitive behavior of --delete-all-output bug Something isn't working
#3079 opened Sep 8, 2024 by ctb
Local input/output files with storage-fs and slurm plugin bug Something isn't working
#3071 opened Sep 5, 2024 by raphaelbetschart
Print a "stack trace" after a MissingInputException enhancement New feature or request
#3063 opened Aug 31, 2024 by thekswenson
Consider supporting docker engine along with appraiser as --sdm option enhancement New feature or request
#3061 opened Aug 30, 2024 by jakevc
1
Why can't it recognize file names containing just numbers? bug Something isn't working
#3055 opened Aug 28, 2024 by xiasijian
2
Verbose Warnings when building the docs bug Something isn't working
#3053 opened Aug 27, 2024 by vandalt
1
1
$SLURM_JOB_ID not set correctly in remote-job-local-storage-prefix when running snakemake in a SLURM job context (which many cluster environments require) bug Something isn't working
#3049 opened Aug 26, 2024 by hermidalc
6
pdb returns false 'NameError' exception for variables in list comprehension bug Something isn't working
#3047 opened Aug 26, 2024 by irm-codebase
1
snakemake >8.0.0 does not respect custom logging config bug Something isn't working
#3044 opened Aug 24, 2024 by samimia-swks
1
groups and group-components are ignored on SLURM when defined in a profile YAML bug Something isn't working
#3039 opened Aug 21, 2024 by hermidalc
6
Dry-runs fail on initial runs of containerized workflows until container is pulled bug Something isn't working
#3038 opened Aug 21, 2024 by zjnolen
Two checkpoint workflow fails to output all files in latest version 8.18.1 bug Something isn't working
#3036 opened Aug 20, 2024 by peterch405
1
Service rules do not work with consumers that have wildcards (many instances of the consumer rule) bug Something isn't working
#3035 opened Aug 20, 2024 by hermidalc
2
Avoiding "haywire" CPU searches due to .snakemake/ conda environment explosion enhancement New feature or request
#3033 opened Aug 19, 2024 by irm-codebase
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