CFGen

Generative modeling of single-cell data.

Installation

1. Create the conda environment:

   conda env create -f environment.yml

2. Activate the environment:

   conda activate cfgen

3. Install the CFGen package in development mode:

   cd directory_where_you_have_your_git_repos/cfgen
   pip install -e .

4. Create symlink to the storage folder for experiments:

   cd directory_where_you_have_your_git_repos/cfgen
   ln -s folder_for_experiment_storage project_folder

Requirements

See environment.yml and requirements.txt for the required packages.

Compatibility

cfgen is compatible with Python 3.10.

Licence

cfgen is licensed under the MIT License.