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Add interoperability chapter #168

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merged 16 commits into from
Nov 15, 2023
Merged

Add interoperability chapter #168

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027185d
Add interoperability notebook
lazappi Feb 17, 2023
becae67
Add interoperability text
lazappi Feb 17, 2023
b97934d
Add interoperability environment
lazappi Feb 17, 2023
b80d699
Add most example code
lazappi Apr 3, 2023
004f93b
Add links
lazappi Apr 3, 2023
a192208
Add conventions
lazappi Apr 3, 2023
76bc788
Merge branch 'master' of https://github.com/theislab/single-cell-best…
Zethson Jun 1, 2023
61551aa
Update environment
Zethson Jun 1, 2023
6c023d7
Update interoperability rpy2/anndata2ri versions
lazappi Aug 8, 2023
3b2ea91
Add mudata to interoperability environment
lazappi Nov 15, 2023
e4afe3d
Add mudata interoperability example
lazappi Nov 15, 2023
dc4c1cf
Add text about multimodal objects
lazappi Nov 15, 2023
26d90b7
Add summary box to interoperability
lazappi Nov 15, 2023
0db1503
Proofread interoperabilty text
lazappi Nov 15, 2023
77e1268
Update interoperability reviewers
lazappi Nov 15, 2023
b0fbd8f
pre-commit
Zethson Nov 15, 2023
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5 changes: 4 additions & 1 deletion jupyter-book/introduction/analysis_tools.ipynb
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Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
{
"cells": [
{
"attachments": {},
"cell_type": "markdown",
"metadata": {},
"source": [
"(introduction:analysis-frameworks)=\n",
"\n",
"# Analysis frameworks and tools"
]
},
Expand Down Expand Up @@ -3282,7 +3285,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.9.13"
"version": "3.8.12"
},
"vscode": {
"interpreter": {
Expand Down
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