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spatialdata-db

Currently focusing on the following datasets for diversity in testing:

  • 10ktp: Visium, Mouse, Brain
  • 4b368: Visium, Mouse, Lung
  • m1v5v: Xenium, Human, Lung
  • oeuwa: Xenium, Mouse, Brain
  • jqmx8: VisiumHD, Mouse, Intestine

UID logic

  • Absolute ID will be a 5 char string of lowercase letters and digits -> 60466176 IDs
  • Leaving out the letters [l, b, o, g, q] due to their similarity to [1, 6, 0, 9, 9] -> 28629151 IDs
  • Reserve ID spaces for technology providers
    • 10 _ _ _ -> 29791 IDs for 10X Genomics
    • vg _ _ _ -> 29791 IDs for Vizgen
    • ns _ _ _ -> 29791 IDs for Nanostring
    • xx _ _ _ -> 29791 IDs for miscellaneous, such as publication

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