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switch back to container #137

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merged 1 commit into from
Sep 25, 2024
Merged

switch back to container #137

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15 changes: 9 additions & 6 deletions tools/plot_ragtag_paf/plot_ragtag_paf.xml
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Original file line number Diff line number Diff line change
@@ -1,12 +1,15 @@
<tool id="plot_ragtag_paf" name="Plot RagTag output" version="0.0.1">
<description>to compare query contigs to the reference</description>
<requirements>
<requirement type="package" version="0.0.2">r-pafr</requirement>
<requirement type="package" version="0.4.2">r-viridislite</requirement>
<requirement type="package" version="1.15.4">r-data.table</requirement>
<requirement type="package" version="2.3.10">r-yaml</requirement>
<requirement type="package" version="3.5.1">r-ggplot2</requirement>
<requirement type="package" version="3.9.5">r-gtools</requirement>
<container type="docker">ghcr.io/tomharrop/r-containers:r2u_24.04_cv1</container>
<!-- The following requirements work but the fonts aren't configured
correctly -->
<!-- <requirement type="package" version="0.0.2">r-pafr</requirement> -->
<!-- <requirement type="package" version="0.4.2">r-viridislite</requirement> -->
<!-- <requirement type="package" version="1.15.4">r-data.table</requirement> -->
<!-- <requirement type="package" version="2.3.10">r-yaml</requirement> -->
<!-- <requirement type="package" version="3.5.1">r-ggplot2</requirement> -->
<!-- <requirement type="package" version="3.9.5">r-gtools</requirement> -->
</requirements>
<command detect_errors="exit_code"><![CDATA[
Rscript
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