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Releases: wenbostar/PDV

v2.1.0

14 May 21:59
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Fixed several bugs and did a few improvements to spectrum prediction:
Full Changelog: v2.0.0...v2.1.0

v2.0.0

27 Mar 18:28
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Supported mirror plot to show the spectral similarity between observed spectrum and predicted spectrum using deep learning models. The prediction is done through the koina server in real time. Supported deep learning models include Prosit models and AlphaPeptDeep models:

AlphaPept_ms2_generic
Prosit_2019_intensity
Prosit_2023_intensity_timsTOF
Prosit_2020_intensity_CID
Prosit_2023_intensity_XL_CMS2
Prosit_2020_intensity_TMT
Prosit_2020_intensity_HCD
Prosit_2023_intensity_XL_CMS3

v1.8.2

25 Nov 23:51
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Fixed a bug (#63) when importing FragPipe result (psm.tsv and mzML files).

v1.8.1

25 May 00:56
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  1. Fixed the color setting issue for i* and r* ions;
  2. Improved meta data visualization for MS/MS data in mzML format.

v1.8.0

29 Apr 06:50
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  1. Supported Casanovo;
  2. Improved visualization for PDV txt format input.

v1.7.4

26 Oct 04:37
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  1. Fixed a few bugs for visualizing FragPipe/MSFragger results.

v1.7.3

09 Apr 14:34
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Mascot dat file: Fixed a bug of processing N term modification.

v1.7.2

05 Apr 06:29
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Fixed a bug of loading Mascot .dat file.

v1.7.1

22 Jan 03:28
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Fixed a bug in column selection.

v1.7.0

10 Oct 20:27
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  1. Supported visualizing N-linked intact glycopeptide identification result (identification file: psm.tsv, MS/MS file: mzML format) generated by MSFragger-Glyco/Philosopher;
  2. Supported showing multiple types of ions (for example, c/z and b/y) in sequence;
  3. For Philosopher/MSFragger result, in default only selected columns are shown in the table.