Added dev version of 2.0.2.

CRAN-SUBMISSION

@@ -1,3 +1,3 @@
-Version: 2.0.1
-Date: 2023-08-13 10:28:15 UTC
-SHA: f88f6e19ce2d121e82869c4418d26fe9ff7b1db9
+Version: 2.0.2
+Date: 2023-10-11 09:31:25 UTC
+SHA: f61490235898a929cb27e7cedbe73b22ab99f66e

DESCRIPTION

@@ -2,7 +2,7 @@ Type: Package
 Package: SCpubr
 Title: Generate Publication Ready Visualizations of Single Cell
     Transcriptomics Data
-Version: 2.0.2
+Version: 2.0.2.9000
 Authors@R: 
     person("Enrique", "Blanco-Carmona", , "[email protected]", role = c("cre", "aut"),
            comment = c(ORCID = "0000-0002-1208-1691"))
@@ -75,7 +75,10 @@ Suggests:
     tidyr,
     UCell,
     viridis,
-    withr
+    withr,
+    liana (>= 0.1.6)
+Remotes: 
+    saezlab/liana
 VignetteBuilder: 
     knitr
 biocViews: Software, SingleCell, Visualization

NAMESPACE

@@ -1,5 +1,6 @@
 # Generated by roxygen2: do not edit by hand
 
+export(do_AffinityAnalysisPlot)
 export(do_AlluvialPlot)
 export(do_BarPlot)
 export(do_BeeSwarmPlot)
@@ -9,6 +10,7 @@ export(do_ChordDiagramPlot)
 export(do_ColorPalette)
 export(do_CopyNumberVariantPlot)
 export(do_CorrelationPlot)
+export(do_DiffusionMapPlot)
 export(do_DimPlot)
 export(do_DotPlot)
 export(do_EnrichmentHeatmap)
@@ -18,11 +20,17 @@ export(do_FunctionalAnnotationPlot)
 export(do_GeyserPlot)
 export(do_GroupedGOTermPlot)
 export(do_GroupwiseDEPlot)
+export(do_LigandReceptorPlot)
+export(do_LoadingsPlot)
+export(do_MetadataPlot)
 export(do_NebulosaPlot)
 export(do_PathwayActivityPlot)
 export(do_RidgePlot)
+export(do_SCEnrichmentHeatmap)
+export(do_SCExpressionHeatmap)
 export(do_TFActivityPlot)
 export(do_TermEnrichmentPlot)
 export(do_ViolinPlot)
 export(do_VolcanoPlot)
 export(package_report)
+export(save_Plot)

NEWS.md

@@ -1,3 +1,16 @@
+# SCpbur v2.0.3 (In Development)
+
+## do_DimPlot()
+-   Fixed a bug caused by using `cells.highlight` with only one cell.
+
+## do_EnrichmentHeatmap()
+-   Changed default value of `scale_scores` to `FALSE`.
+-   Fixed a bug in which scores were not actually being scaled when `scale_scores = TRUE`.
+-   Fixed a bug in which setting `scale_scores = TRUE` and `features.order` would trigger an error since the output had the suffix `_scaled` on it. This has been patched.
+
+## do_LigandReceptorPlot()
+-   Added a new parameter `top_interactions_by_group` which when set to `TRUE` 
+
 # SCpbur v2.0.2
 
 ## General.