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breedR 0.11
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@famuvie famuvie released this 05 Dec 10:12
· 143 commits to master since this release
v0.11
f97a285
  • Install breedR from package repository avoiding package devtools
  • New vignette: Computing Heritability
  • Access to inverse Average-Information matrix
  • Automatic computation of heritability for genetic models and method 'ai'
  • remlf90() interface to PROGSF90 OPTIONS
  • Much more exhaustive testing ensures greater stability.
  • New datasets Douglas (multi-site) and Larix (repeated measurements)
  • Separate R-package from BLUPF90 binaries. Exploit 64bit architectures.
  • Several bugfixes. Notably, the empirical variogram computation and memory issues with the AR model.
  • Full internal refactoring (with few 'visible' changes in the interface)
  • model.matrix() no longer separates fixed and random effects.
    It returns the same structure as ranef() which is more intuitive.
  • vcov() works now with any of the non-diagonal random effects.
  • New 'generic' model component allows passing a list of arbitrary incidence and covariance/precision matrices
  • Optimized splines model. It runs about 5x faster.
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