Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Update models with adaptation mechanisms and change tag 'adaptive threshold' to 'adaptation' #3241

Merged
merged 2 commits into from
Jul 31, 2024
Merged

Update models with adaptation mechanisms and change tag 'adaptive threshold' to 'adaptation' #3241

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
8828f56
change adaptive threshold to adaptation
jessica-mitchell Jun 27, 2024
386b1de
add izhikevich
jessica-mitchell Jul 31, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion models/aeif_cond_alpha.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -68,7 +68,7 @@ extern "C" int aeif_cond_alpha_dynamics( double, const double*, double*, void* )
*/
extern "C" int aeif_cond_alpha_dynamics_DT0( double, const double*, double*, void* );

/* BeginUserDocs: neuron, integrate-and-fire, adaptive threshold, conductance-based
/* BeginUserDocs: neuron, integrate-and-fire, adaptation, conductance-based

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/aeif_cond_alpha_astro.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -68,7 +68,7 @@ extern "C" int aeif_cond_alpha_astro_dynamics( double, const double*, double*, v
*/
extern "C" int aeif_cond_alpha_astro_dynamics_DT0( double, const double*, double*, void* );

/* BeginUserDocs: neuron, integrate-and-fire, adaptive threshold, conductance-based, astrocyte
/* BeginUserDocs: neuron, integrate-and-fire, adaptation, conductance-based, astrocyte

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/aeif_cond_alpha_multisynapse.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -42,7 +42,7 @@
#include "ring_buffer.h"
#include "universal_data_logger.h"

/* BeginUserDocs: neuron, integrate-and-fire, adaptive threshold, conductance-based
/* BeginUserDocs: neuron, integrate-and-fire, adaptation, conductance-based
Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/aeif_cond_beta_multisynapse.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -56,7 +56,7 @@ namespace nest
*/
extern "C" int aeif_cond_beta_multisynapse_dynamics( double, const double*, double*, void* );

/* BeginUserDocs: neuron, adaptive threshold, integrate-and-fire, conductance-based
/* BeginUserDocs: neuron, adaptation, integrate-and-fire, conductance-based

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/aeif_cond_exp.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -68,7 +68,7 @@ extern "C" int aeif_cond_exp_dynamics( double, const double*, double*, void* );
*/
extern "C" int aeif_cond_exp_dynamics_DT0( double, const double*, double*, void* );

/* BeginUserDocs: neuron, adaptive threshold, integrate-and-fire, conductance-based
/* BeginUserDocs: neuron, adaptation, integrate-and-fire, conductance-based

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/aeif_psc_alpha.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@ namespace nest
*/
extern "C" int aeif_psc_alpha_dynamics( double, const double*, double*, void* );

/* BeginUserDocs: neuron, adaptive threshold, integrate-and-fire, current-based
/* BeginUserDocs: neuron, adaptation, integrate-and-fire, current-based

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/aeif_psc_delta.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@ namespace nest
*/
extern "C" int aeif_psc_delta_dynamics( double, const double*, double*, void* );

/* BeginUserDocs: neuron, adaptive threshold, integrate-and-fire, current-based
/* BeginUserDocs: neuron, adaptation, integrate-and-fire, current-based

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/aeif_psc_delta_clopath.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -58,7 +58,7 @@ namespace nest
*/
extern "C" int aeif_psc_delta_clopath_dynamics( double, const double*, double*, void* );

/* BeginUserDocs: neuron, adaptive threshold, integrate-and-fire, Clopath plasticity, current-based
/* BeginUserDocs: neuron, adaptation, integrate-and-fire, Clopath plasticity, current-based

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/aeif_psc_exp.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@ namespace nest
*/
extern "C" int aeif_psc_exp_dynamics( double, const double*, double*, void* );

/* BeginUserDocs: neuron, integrate-and-fire, adaptive threshold, current-based
/* BeginUserDocs: neuron, integrate-and-fire, adaptation, current-based

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/amat2_psc_exp.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,7 @@
namespace nest
{

/* BeginUserDocs: neuron, integrate-and-fire, current-based
/* BeginUserDocs: neuron, integrate-and-fire, current-based, adaptation

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/eprop_iaf_adapt_bsshslm_2020.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@
namespace nest
{

/* BeginUserDocs: neuron, e-prop plasticity, current-based, integrate-and-fire, adaptive threshold
/* BeginUserDocs: neuron, e-prop plasticity, current-based, integrate-and-fire, adaptation

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/gif_cond_exp.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -48,7 +48,7 @@ namespace nest

extern "C" int gif_cond_exp_dynamics( double, const double*, double*, void* );

/* BeginUserDocs: neuron, integrate-and-fire, conductance-based
/* BeginUserDocs: neuron, integrate-and-fire, conductance-based, adaptation

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/gif_cond_exp_multisynapse.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -46,7 +46,7 @@ namespace nest

extern "C" int gif_cond_exp_multisynapse_dynamics( double, const double*, double*, void* );

/* BeginUserDocs: neuron, integrate-and-fire, conductance-based
/* BeginUserDocs: neuron, integrate-and-fire, conductance-based, adaptation

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/gif_pop_psc_exp.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,7 @@ namespace nest

class Network;

/* BeginUserDocs: neuron, integrate-and-fire, current-based
/* BeginUserDocs: neuron, integrate-and-fire, current-based, adaptation

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/gif_psc_exp.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@
namespace nest
{

/* BeginUserDocs: neuron, integrate-and-fire, current-based
/* BeginUserDocs: neuron, integrate-and-fire, current-based, adaptation

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/gif_psc_exp_multisynapse.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@
namespace nest
{

/* BeginUserDocs: neuron, integrate-and-fire, current-based
/* BeginUserDocs: neuron, integrate-and-fire, current-based, adaptation

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/glif_cond.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -42,7 +42,7 @@

#include "dictdatum.h"

/* BeginUserDocs: neuron, integrate-and-fire, conductance-based
/* BeginUserDocs: neuron, integrate-and-fire, conductance-based, adaptation

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/glif_psc.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@

#include "dictdatum.h"

/* BeginUserDocs: neuron, integrate-and-fire, current-based
/* BeginUserDocs: neuron, integrate-and-fire, current-based, adaptation

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/glif_psc_double_alpha.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@

#include "dictdatum.h"

/* BeginUserDocs: neuron, integrate-and-fire, current-based
/* BeginUserDocs: neuron, integrate-and-fire, current-based, adaptation

Short description
+++++++++++++++++
Expand Down
4 changes: 2 additions & 2 deletions models/ht_neuron.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -63,7 +63,7 @@ namespace nest
*/
extern "C" int ht_neuron_dynamics( double, const double*, double*, void* );

/* BeginUserDocs: neuron, Hill-Tononi plasticity
/* BeginUserDocs: neuron, Hill-Tononi plasticity, adaptation, integrate-and-fire

Short description
+++++++++++++++++
Expand All @@ -76,7 +76,7 @@ Description
This model neuron implements a slightly modified version of the
neuron model described in [1]_. The most important properties are:

- Integrate-and-fire with threshold adaptive threshold.
- Integrate-and-fire with adaptive threshold.
- Repolarizing potassium current instead of hard reset.
- AMPA, NMDA, GABA_A, and GABA_B conductance-based synapses with
beta-function (difference of exponentials) time course.
Expand Down
4 changes: 2 additions & 2 deletions models/izhikevich.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@
namespace nest
{

/* BeginUserDocs: neuron, integrate-and-fire
/* BeginUserDocs: neuron, integrate-and-fire, adaptation

Short description
+++++++++++++++++
Expand All @@ -49,7 +49,7 @@ Implementation of the simple spiking neuron model introduced by Izhikevich

.. math::
&dV_m/dt = 0.04 {V_m}^2 + 5 V_m + 140 - U_m + I \\
&du/dt = a (b V_m - U_m) \\
&dU_m/dt = a (b V_m - U_m) \\

.. math::

Expand Down
2 changes: 1 addition & 1 deletion models/mat2_psc_exp.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,7 @@
namespace nest
{

/* BeginUserDocs: neuron, integrate-and-fire, current-based
/* BeginUserDocs: neuron, integrate-and-fire, current-based, adaptation

Short description
+++++++++++++++++
Expand Down
2 changes: 1 addition & 1 deletion models/pp_psc_delta.h
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@
namespace nest
{

/* BeginUserDocs: neuron, point process, current-based
/* BeginUserDocs: neuron, point process, current-based, adaptation

Short description
+++++++++++++++++
Expand Down
Loading