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philosopher
PublicPeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filteringMSFragger-DIA-manuscript
PublicFragPipe
PublicA cross-platform proteomics data analysis suitePTM-Shepherd
PublicFragPipe-Analyst
Publiceasypqp
PublicTMT-Integrator
Publicmsconvert-scripts
PublicFragPipe-to-coADAPTr
PublicEntrapBench
PublicdiaTracer
PublicdiaTracer-manuscript
PublicMSFragger
PublicUltrafast, comprehensive peptide identification for mass spectrometry–based proteomicsIonQuant
Publicpwiz
PublicFragPipeTPP
PublicPD-Nodes
PublicCrystal-C
Publicsqlite-jdbc
Publictimsrust
Publicaho-corasick
PublicDIALib-QC
Publicpicked_group_fdr
Publicalphapeptdeep
PublicDIA-Umpire
Publicnesvilab.github.io
Public